5530400K19Rik Gene Detail

Summary

• Symbol
  5530400K19Rik
• Name
  RIKEN cDNA 5530400K19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921757
  NCBI Gene: 74507
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:153590400-153592315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921757	lncRNA gene	Chr1:153590400-153592315 (+)
129S1/SvImJ	ENSMUSG00200002961	unclassified gene	Chr1:151031337-151033252 (+)
A/J	ENSMUSG00195013992	unclassified gene	Chr1:150408907-150410822 (+)
AKR/J	ENSMUSG00220006377	unclassified gene	Chr1:150217692-150219597 (+)
BALB/cJ	ENSMUSG00180035062	unclassified gene	Chr1:150638548-150640463 (+)
C3H/HeJ	ENSMUSG00175003024	unclassified gene	Chr1:150675409-150677324 (+)
C57BL/6NJ	ENSMUSG00215003975	unclassified gene	Chr1:150573582-150575497 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000473	unclassified gene	Chr1:144452256-144454219 (+)
CAST/EiJ	ENSTCUG00005006297	unclassified gene	Chr1:149224336-149226252 (+)
CBA/J	ENSMUSG00210034002	unclassified gene	Chr1:150579178-150581093 (+)
DBA/2J	ENSMUSG00185047343	unclassified gene	Chr1:154870882-154872801 (+)
FVB/NJ	ENSMUSG00205033869	unclassified gene	Chr1:149710969-149712888 (+)
JF1/MsJ	ENSUMUG00000023919	unclassified gene	Chr1:154019493-154021408 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013714	unclassified gene	Chr1:150427296-150429215 (+)
NZO/HlLtJ	ENSMUSG00225006139	unclassified gene	Chr1:158092220-158094135 (+)
PWK/PhJ	ENSLUMG00010029529	unclassified gene	Chr1:149377407-149379322 (+)
SPRET/EiJ	ENSMSPG00010005449	unclassified gene	Chr1:152690683-152692579 (+)
WSB/EiJ	ENSIUOG00005025225	unclassified gene	Chr1:149999243-150001158 (+)

Homology

• Gene Tree
  5530400K19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000102404 (Evidence)
• NCBI Gene
  74507

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102404	Ensembl Gene Model | MGI Sequence Detail	1916	C57BL/6J
transcript	AK017425	GenBank | ENA | DDBJ | MGI Sequence Detail	1919	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573