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5530400K19Rik Gene Detail
Summary
  • Symbol
    5530400K19Rik
  • Name
    RIKEN cDNA 5530400K19 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921757
    NCBI Gene: 74507
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:153590400-153592315 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921757
 lncRNA gene Chr1:153590400-153592315 (+)
129S1/SvImJ MGP_129S1SvImJ_G0000648
 unclassified gene Chr1:158558727-158560642 (+)
A/J MGP_AJ_G0000622
 unclassified gene Chr1:152167047-152168962 (+)
AKR/J MGP_AKRJ_G0000611
 unclassified gene Chr1:156876662-156878567 (+)
BALB/cJ MGP_BALBcJ_G0000614
 unclassified gene Chr1:152714331-152716246 (+)
C3H/HeJ MGP_C3HHeJ_G0000601
 unclassified gene Chr1:156976765-156978680 (+)
C57BL/6NJ MGP_C57BL6NJ_G0000731
 unclassified gene Chr1:164034040-164035955 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0000473
 unclassified gene Chr1:144452256-144454219 (+)
CAST/EiJ MGP_CASTEiJ_G0000595
 unclassified gene Chr1:156496871-156498787 (+)
CBA/J MGP_CBAJ_G0000592
 unclassified gene Chr1:169801152-169803067 (+)
DBA/2J MGP_DBA2J_G0000596
 unclassified gene Chr1:151190551-151192470 (+)
FVB/NJ MGP_FVBNJ_G0000610
 unclassified gene Chr1:149647336-149649255 (+)
LP/J MGP_LPJ_G0000654
 unclassified gene Chr1:159681633-159683552 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0000602
 unclassified gene Chr1:177426717-177428636 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0000723
 unclassified gene Chr1:156655041-156656956 (+)
PWK/PhJ MGP_PWKPhJ_G0000546
 unclassified gene Chr1:150229350-150231378 (+)
SPRET/EiJ MGP_SPRETEiJ_G0000521
 unclassified gene Chr1:155453699-155455595 (+)
WSB/EiJ MGP_WSBEiJ_G0000598
 unclassified gene Chr1:156736826-156738741 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000102404 Ensembl Gene Model | MGI Sequence Detail 1916 C57BL/6J ±  kb
transcript AK017425 GenBank | ENA | DDBJ | MGI Sequence Detail 1919 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory