4933439C10Rik Gene Detail

Summary

• Symbol
  4933439C10Rik
• Name
  RIKEN cDNA 4933439C10 gene
• Synonyms
  2610028M21Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921726
  NCBI Gene: 74476
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:59396479-59402211 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.72 cM, cytoband B2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921726	lncRNA gene	Chr11:59396479-59404477 (+)
129S1/SvImJ	ENSMUSG00200037177	lncRNA gene	Chr11:56404002-56411984 (+)
A/J	ENSMUSG00195043028	lncRNA gene	Chr11:56336835-56344569 (+)
AKR/J	ENSMUSG00220050503	lncRNA gene	Chr11:56501001-56508986 (+)
BALB/cJ	ENSMUSG00180050049	lncRNA gene	Chr11:56420122-56428109 (+)
C3H/HeJ	ENSMUSG00175050127	lncRNA gene	Chr11:56371988-56379720 (+)
C57BL/6NJ	ENSMUSG00215039388	lncRNA gene	Chr11:56187446-56195431 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013312	unclassified non-coding RNA gene	Chr11:54320144-54327999 (+)
CAST/EiJ	ENSTCUG00005046920	lncRNA gene	Chr11:55911831-55919650 (+)
CBA/J	ENSMUSG00210042079	lncRNA gene	Chr11:56223340-56231072 (+)
DBA/2J	ENSMUSG00185045726	lncRNA gene	Chr11:56403726-56411712 (+)
FVB/NJ	ENSMUSG00205051076	lncRNA gene	Chr11:56293908-56301885 (+)
JF1/MsJ	ENSUMUG00000052372	lncRNA gene	Chr11:56755237-56762969 (+)
LP/J	ENSMUSG00230050506	lncRNA gene	Chr11:57612005-57619987 (+)
NOD/ShiLtJ	ENSMUSG00190052297	lncRNA gene	Chr11:56473479-56481460 (+)
NZO/HlLtJ	ENSMUSG00225032820	lncRNA gene	Chr11:59624483-59632467 (+)
PWK/PhJ	ENSLUMG00010037267	lncRNA gene	Chr11:56217904-56225634 (+)
SPRET/EiJ	ENSMSPG00010043334	lncRNA gene	Chr11:56991347-56999161 (+)
WSB/EiJ	ENSIUOG00005040538	lncRNA gene	Chr11:56271566-56279542 (+)

Homology

• Gene Tree
  4933439C10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4933439C10Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  20

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000072893 (Evidence)
• NCBI Gene
  74476

Representative Sequences			Length	Strain/Species
genomic	74476	NCBI Gene Model | MGI Sequence Detail	5733	C57BL/6J
transcript	NR_015585	RefSeq | MGI Sequence Detail	2227	C57BL/6
polypeptide	Q3TEA0	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 21

  cDNA 21

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1923624

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4933439C10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101798	Chr11:59396462-59396509 (+)	7 bp