4933440N22Rik Gene Detail

Summary

• Symbol
  4933440N22Rik
• Name
  RIKEN cDNA 4933440N22 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1921721
  NCBI Gene: 74471
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:117882769-117884721 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 55.67 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921721	protein coding gene	Chr6:117882767-117885166 (-)
129S1/SvImJ	ENSMUSG00200051618	unclassified gene	Chr6:115090540-115092492 (-)
A/J	ENSMUSG00195048211	unclassified gene	Chr6:114490731-114492684 (-)
AKR/J	ENSMUSG00220034372	unclassified gene	Chr6:113376598-113378551 (-)
BALB/cJ	ENSMUSG00180050934	unclassified gene	Chr6:114858444-114860398 (-)
C3H/HeJ	ENSMUSG00175036125	unclassified gene	Chr6:62609684-62611636 (+)
C57BL/6NJ	ENSMUSG00215049350	unclassified gene	Chr6:114848610-114850563 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001794	unclassified gene	Chr6:112938022-112940006 (-)
CAST/EiJ	ENSTCUG00005050687	unclassified gene	Chr6:114649053-114651007 (-)
CBA/J	ENSMUSG00210045166	unclassified gene	Chr6:114625735-114627688 (-)
DBA/2J	ENSMUSG00185049662	unclassified gene	Chr6:115284019-115285973 (-)
FVB/NJ	ENSMUSG00205051038	unclassified gene	Chr6:113740441-113742393 (-)
JF1/MsJ	ENSUMUG00000055318	unclassified gene	Chr6:113881862-113883812 (-)
LP/J	ENSMUSG00230049210	unclassified gene	Chr6:116488091-116490044 (-)
NOD/ShiLtJ	ENSMUSG00190052293	unclassified gene	Chr6:114238016-114239968 (-)
NZO/HlLtJ	ENSMUSG00225047599	unclassified gene	Chr6:118343913-118345865 (-)
PWK/PhJ	ENSLUMG00010048949	unclassified gene	Chr6:113241032-113242985 (-)
SPRET/EiJ	ENSMSPG00010046759	unclassified gene	Chr6:116090919-116092870 (-)
WSB/EiJ	ENSIUOG00005045345	unclassified gene	Chr6:114916068-114918010 (-)

Homology

• Gene Tree
  4933440N22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000042087 (Evidence)
• NCBI Gene
  74471

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042087	Ensembl Gene Model | MGI Sequence Detail	1953	C57BL/6J
transcript	AK017138	GenBank | ENA | DDBJ | MGI Sequence Detail	1953	C57BL/6J
polypeptide	Q9CU99	UniProt | EBI | MGI Sequence Detail	216	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933440N22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62642	Chr6:117884714-117884722 (-)	3 bp
Tssr62641	Chr6:117884656-117884694 (-)	46 bp
Tssr62640	Chr6:117884622-117884632 (-)	94 bp
Tssr62639	Chr6:117883455-117883463 (-)	1,262 bp