4632404M16Rik Gene Detail

Summary

• Symbol
  4632404M16Rik
• Name
  RIKEN cDNA 4632404M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921598
  NCBI Gene: 74348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:102041931-102044812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921598	lncRNA gene	Chr3:102041931-102044812 (+)
129S1/SvImJ	ENSMUSG00200045051	lncRNA gene	Chr3:98646043-98648924 (+)
A/J	ENSMUSG00195049319	lncRNA gene	Chr3:99043878-99046759 (+)
AKR/J	ENSMUSG00220043536	lncRNA gene	Chr3:97406342-97409223 (+)
BALB/cJ	ENSMUSG00180043234	lncRNA gene	Chr3:98983505-98986386 (+)
C3H/HeJ	ENSMUSG00175031960	lncRNA gene	Chr3:98529642-98532523 (+)
C57BL/6NJ	ENSMUSG00215039304	lncRNA gene	Chr3:99305090-99307971 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034514	sense intronic lncRNA gene	Chr3:96252058-96254977 (+)
CAST/EiJ	ENSTCUG00005020328	lncRNA gene	Chr3:99264360-99267240 (+)
CBA/J	ENSMUSG00210051573	lncRNA gene	Chr3:99151718-99154599 (+)
DBA/2J	ENSMUSG00185046270	lncRNA gene	Chr3:99647526-99650407 (+)
FVB/NJ	ENSMUSG00205028267	lncRNA gene	Chr3:98223022-98225903 (+)
JF1/MsJ	ENSUMUG00000052876	lncRNA gene	Chr3:98362980-98366021 (+)
LP/J	ENSMUSG00230045675	lncRNA gene	Chr3:101574525-101577406 (+)
NOD/ShiLtJ	ENSMUSG00190048117	lncRNA gene	Chr3:99828391-99831272 (+)
NZO/HlLtJ	ENSMUSG00225019981	lncRNA gene	Chr3:104026674-104029555 (+)
PWK/PhJ	ENSLUMG00010029701	lncRNA gene	Chr3:98441933-98444790 (+)
SPRET/EiJ	ENSMSPG00010048099	lncRNA gene	Chr3:98697800-98700666 (+)
WSB/EiJ	ENSIUOG00005031686	lncRNA gene	Chr3:99170131-99173011 (+)

Homology

• Gene Tree
  4632404M16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4632404M16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000106296 (Evidence)
• NCBI Gene
  74348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106296	Ensembl Gene Model | MGI Sequence Detail	2882	C57BL/6J
transcript	ENSMUST00000197326	Ensembl | MGI Sequence Detail	2882	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573