4122401K19Rik Gene Detail

Summary

• Symbol
  4122401K19Rik
• Name
  RIKEN cDNA 4122401K19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921583
  NCBI Gene: 100306953
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:12573015-12575784 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921583	lncRNA gene	Chr19:12573015-12575784 (+)
129S1/SvImJ	ENSMUSG00200053152	lncRNA gene	Chr19:9263622-9266391 (+)
A/J	ENSMUSG00195053530	lncRNA gene	Chr19:9396512-9399309 (+)
AKR/J	ENSMUSG00220051346	lncRNA gene	Chr19:9373627-9376396 (+)
BALB/cJ	ENSMUSG00180052245	lncRNA gene	Chr19:9761100-9763897 (+)
C3H/HeJ	ENSMUSG00175015215	lncRNA gene	Chr19:9104914-9107681 (+)
C57BL/6NJ	ENSMUSG00215048949	lncRNA gene	Chr19:9174365-9177134 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045299	lncRNA gene	Chr19:8956065-8958858 (+)
CBA/J	ENSMUSG00210050430	lncRNA gene	Chr19:9303404-9306171 (+)
DBA/2J	ENSMUSG00185052941	lncRNA gene	Chr19:9713468-9716235 (+)
FVB/NJ	ENSMUSG00205053591	lncRNA gene	Chr19:9158951-9161725 (+)
JF1/MsJ	ENSUMUG00000056587	lncRNA gene	Chr19:9796831-9799596 (+)
LP/J	ENSMUSG00230021544	lncRNA gene	Chr19:10631288-10634057 (+)
NOD/ShiLtJ	ENSMUSG00190053323	lncRNA gene	Chr19:9121024-9123820 (+)
NZO/HlLtJ	ENSMUSG00225046509	lncRNA gene	Chr19:14340300-14343069 (+)
PWK/PhJ	ENSLUMG00010009140	lncRNA gene	Chr19:9210875-9213653 (+)
SPRET/EiJ	ENSMSPG00010051208	lncRNA gene	Chr19:9033554-9036310 (+)
WSB/EiJ	ENSIUOG00005051356	lncRNA gene	Chr19:8815770-8818539 (+)

Homology

• Gene Tree
  4122401K19Rik
  

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120104 (Evidence)
• NCBI Gene
  100306953

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120104	Ensembl Gene Model | MGI Sequence Detail	2770	C57BL/6J
transcript	ENSMUST00000241394	Ensembl | MGI Sequence Detail	2770	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4122401K19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155340	Chr19:12573050-12573065 (+)	43 bp
Tssr155341	Chr19:12573081-12573115 (+)	83 bp
Tssr155342	Chr19:12573127-12573148 (+)	123 bp