1700086D15Rik Gene Detail

Summary

• Symbol
  1700086D15Rik
• Name
  RIKEN cDNA 1700086D15 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1921532
  NCBI Gene: 115487729
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:65042718-65050727 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 40.42 cM, cytoband B3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  308 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921532	protein coding gene	Chr11:65038933-65050727 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195037829	protein coding gene	Chr11:62008666-62016646 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175040626	protein coding gene	Chr11:62025142-62033122 (-)
C57BL/6NJ	ENSMUSG00215054953	protein coding gene	Chr11:61808029-61816010 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016511	protein coding gene	Chr11:59936674-59944393 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  1700086D15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700086D15Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000020548 (Evidence)
• NCBI Gene
  115487729

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000020548	Ensembl Gene Model | MGI Sequence Detail	8010	C57BL/6J
transcript	ENSMUST00000331986	Ensembl | MGI Sequence Detail	1360	Not Applicable
polypeptide	Q9D9E9	UniProt | EBI | MGI Sequence Detail	151	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573