Kdm6bos MGI Mouse Gene Detail - MGI:1921523 - KDM1 lysine (K)-specific demethylase 6B, opposite strand

Symbol

Kdm6bos
Name

KDM1 lysine (K)-specific demethylase 6B, opposite strand
Synonyms

1700064E03Rik

Feature Type

antisense lncRNA gene

BioType Conflict
IDs

MGI:1921523
NCBI Gene: 74273
Alliance

genome feature page

Sequence Map

Chr11:69292293-69293540 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 42.60 cM
Mapping Data

1 experiment

SNPs within 2kb

87 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921523	antisense lncRNA gene	Chr11:69292293-69293540 (+)
129S1/SvImJ	ENSMUSG00200042594	protein coding gene	Chr11:66238023-66239255 (+)
129S1/SvImJ	ENSMUSG00200050395	lncRNA gene	Chr11:66238052-66239240 (+)
A/J	ENSMUSG00195052615	lncRNA gene	Chr11:66263402-66264590 (+)
A/J	ENSMUSG00195051693	protein coding gene	Chr11:66263373-66264623 (+)
AKR/J	ENSMUSG00220054107	protein coding gene	Chr11:66373092-66374341 (+)
AKR/J	ENSMUSG00220054222	lncRNA gene	Chr11:66373121-66374308 (+)
BALB/cJ	ENSMUSG00180054097	lncRNA gene	Chr11:66334657-66335845 (+)
BALB/cJ	ENSMUSG00180039376	protein coding gene	Chr11:66334628-66335878 (+)
C3H/HeJ	ENSMUSG00175054384	protein coding gene	Chr11:66284931-66286181 (+)
C3H/HeJ	ENSMUSG00175054505	lncRNA gene	Chr11:66284960-66286148 (+)
C57BL/6NJ	ENSMUSG00215055037	lncRNA gene	Chr11:66061314-66062501 (+)
C57BL/6NJ	ENSMUSG00215052276	protein coding gene	Chr11:66061285-66062534 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002648	antisense lncRNA gene	Chr11:64131881-64133060 (+)
CAST/EiJ	ENSTCUG00005053709	lncRNA gene	Chr11:65820019-65821205 (+)
CBA/J	ENSMUSG00210053255	protein coding gene	Chr11:66139001-66140251 (+)
CBA/J	ENSMUSG00210054431	lncRNA gene	Chr11:66139030-66140218 (+)
DBA/2J	ENSMUSG00185056730	lncRNA gene	Chr11:66339122-66340107 (+)
DBA/2J	ENSMUSG00185056106	protein coding gene	Chr11:66339091-66340142 (+)
FVB/NJ	ENSMUSG00205053904	lncRNA gene	Chr11:66230137-66231325 (+)
FVB/NJ	ENSMUSG00205053871	protein coding gene	Chr11:66230108-66231358 (+)
JF1/MsJ	ENSUMUG00000057324	lncRNA gene	Chr11:66737310-66738295 (+)
LP/J	ENSMUSG00230052936	protein coding gene	Chr11:67448384-67449634 (+)
LP/J	ENSMUSG00230053767	lncRNA gene	Chr11:67448413-67449601 (+)
NOD/ShiLtJ	ENSMUSG00190054283	lncRNA gene	Chr11:66367784-66368972 (+)
NOD/ShiLtJ	ENSMUSG00190034017	protein coding gene	Chr11:66367755-66369005 (+)
NZO/HlLtJ	ENSMUSG00225048639	lncRNA gene	Chr11:69628928-69630116 (+)
NZO/HlLtJ	ENSMUSG00225045087	protein coding gene	Chr11:69628899-69630149 (+)
PWK/PhJ	ENSLUMG00010053688	lncRNA gene	Chr11:66253525-66254710 (+)
SPRET/EiJ	ENSMSPG00010049300	lncRNA gene	Chr11:66982715-66983907 (+)
WSB/EiJ	ENSIUOG00005052686	lncRNA gene	Chr11:66267042-66268229 (+)

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Gene Tree

Kdm6bos

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

4
Chemically induced (other)

1
Gene trapped

3
Genomic Mutations

1 involving Kdm6bos
Find Mice (IMSR)

4 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

35
UniProt

1

Ensembl

ENSMUSG00000085178 (Evidence)
NCBI Gene

74273

			Length	Strain/Species	Flank
genomic	ENSMUSG00000085178	Ensembl Gene Model \| MGI Sequence Detail	1248	C57BL/6J	± kb
transcript	ENSMUST00000129924	Ensembl \| MGI Sequence Detail	900	Not Applicable
polypeptide	Q3V484	UniProt \| EBI \| MGI Sequence Detail	88	Not Applicable

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UniProt

1 Sequence

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All nucleic 1

cDNA 1

Microarray probesets 1

Summaries

All 15

Phenotypes 5
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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