About   Help   FAQ
Slx4ip Gene Detail
Summary
  • Symbol
    Slx4ip
  • Name
    SLX4 interacting protein
  • Synonyms
    2210009G21Rik, 2410004I22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921493
    NCBI Gene: 74243
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:136733138-136913870 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 67.65 cM, cytoband G1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    745 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921493
 protein coding gene Chr2:136733138-136923273 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026561
 protein coding gene Chr2:140681033-140861156 (+)
A/J MGP_AJ_G0026525
 protein coding gene Chr2:134980523-135149185 (+)
AKR/J MGP_AKRJ_G0026499
 protein coding gene Chr2:138851575-139031663 (+)
BALB/cJ MGP_BALBcJ_G0026537
 protein coding gene Chr2:135359970-135535574 (+)
C3H/HeJ MGP_C3HHeJ_G0026280
 protein coding gene Chr2:139301828-139485087 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026982
 protein coding gene Chr2:144900065-145090127 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024359
 protein coding gene Chr2:129517941-129678905 (+)
CAST/EiJ MGP_CASTEiJ_G0025741
 protein coding gene Chr2:139680089-139861320 (+)
CBA/J MGP_CBAJ_G0026260
 protein coding gene Chr2:150301161-150493645 (+)
DBA/2J MGP_DBA2J_G0026394
 protein coding gene Chr2:134342465-134521189 (+)
FVB/NJ MGP_FVBNJ_G0026358
 protein coding gene Chr2:132925132-133104327 (+)
LP/J MGP_LPJ_G0026498
 protein coding gene Chr2:140849199-141021942 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026378
 protein coding gene Chr2:154114138-154313042 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027037
 protein coding gene Chr2:138855642-139038692 (+)
PWK/PhJ MGP_PWKPhJ_G0025477
 protein coding gene Chr2:133962221-134137940 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025279
 protein coding gene Chr2:137965963-138137822 (+)
WSB/EiJ MGP_WSBEiJ_G0025815
 protein coding gene Chr2:139764316-139952651 (+)



Homology
more
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
  • Synonyms
    bA204H22.1, bA254M13.1, C20orf94, dJ1099D15.3
  • Links
    NCBI Gene ID: 128710
    neXtProt AC: NX_Q5VYV7
    UniProt: Q5VYV7

  • Chr Location
    20p12.2; chr20:10435305-10636829 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
  • All Mutations and Alleles
    22
  • Chemically induced (other)
    1
  • Gene trapped
    16
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Slx4ip
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    47 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    50
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027281 Ensembl Gene Model | MGI Sequence Detail 180733 C57BL/6J ±  kb
transcript ENSMUST00000099311 Ensembl | MGI Sequence Detail 5089 Not Applicable  
polypeptide ENSMUSP00000096914 Ensembl | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 51
    Genomic 1
    cDNA 50

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919578, MGI:2142868
References
more
  • Summaries
    All 55
    Diseases 1
    Phenotypes 32
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory