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1700009C05Rik Gene Detail
Summary
  • Symbol
    1700009C05Rik
  • Name
    RIKEN cDNA 1700009C05 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921470
    NCBI Gene: 74220
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:81877446-81887781 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    264 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921470
 lncRNA gene Chr6:81876966-81894724 (-)
129S1/SvImJ ENSMUSG00200012249
 lncRNA gene Chr6:78852290-78862618 (-)
A/J ENSMUSG00195012706
 lncRNA gene Chr6:78540130-78550490 (-)
AKR/J ENSMUSG00220002073
 lncRNA gene Chr6:77475729-77486057 (-)
BALB/cJ ENSMUSG00180010665
 lncRNA gene Chr6:78916257-78926616 (-)
C3H/HeJ ENSMUSG00175041295
 lncRNA gene Chr6:98500428-98510760 (+)
C57BL/6NJ ENSMUSG00215014781
 lncRNA gene Chr6:78888287-78898619 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006372
 lincRNA gene Chr6:78111048-78117197 (-)
CAST/EiJ ENSTCUG00005008569
 lncRNA gene Chr6:78931974-78942330 (-)
CBA/J ENSMUSG00210011713
 lncRNA gene Chr6:78709278-78719614 (-)
DBA/2J ENSMUSG00185000990
 lncRNA gene Chr6:79262233-79272565 (-)
FVB/NJ ENSMUSG00205029139
 lncRNA gene Chr6:77962635-77972999 (-)
JF1/MsJ ENSUMUG00000021131
 lncRNA gene Chr6:78320856-78331167 (-)
LP/J ENSMUSG00230008241
 lncRNA gene Chr6:80409727-80420055 (-)
NOD/ShiLtJ ENSMUSG00190001670
 lncRNA gene Chr6:78361253-78371616 (-)
NZO/HlLtJ ENSMUSG00225021495
 lncRNA gene Chr6:82318095-82328398 (-)
PWK/PhJ ENSLUMG00010006734
 lncRNA gene Chr6:77697967-77708296 (-)
SPRET/EiJ ENSMSPG00010000403
 lncRNA gene Chr6:79829005-79839349 (-)
WSB/EiJ ENSIUOG00005018713
 lncRNA gene Chr6:79281110-79291449 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    56
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 74220 NCBI Gene Model | MGI Sequence Detail 10336 C57BL/6J ±  kb
transcript NR_046040 RefSeq | MGI Sequence Detail 787 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 15
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory