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Ctcflos Gene Detail
Summary
  • Symbol
    Ctcflos
  • Name
    CCCTC-binding factor like, opposite strand
  • Synonyms
    1300015D01Rik
Location &
Maps
more
  • Sequence Map
    Chr2:172966542-172974997 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 95.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    409 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921411
 antisense lncRNA gene Chr2:172924558-172980080 (+)
129S1/SvImJ ENSMUSG00200040821
 lncRNA gene Chr2:169884601-169912327 (+)
A/J ENSMUSG00195025533
 lncRNA gene Chr2:170213022-170240761 (+)
AKR/J ENSMUSG00220037543
 lncRNA gene Chr2:169508699-169536414 (+)
BALB/cJ ENSMUSG00180038066
 lncRNA gene Chr2:169649907-169677403 (+)
C3H/HeJ ENSMUSG00175044674
 lncRNA gene Chr2:170419595-170447093 (+)
C57BL/6NJ ENSMUSG00215034951
 lncRNA gene Chr2:169848491-169875977 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003325
 antisense lncRNA gene Chr2:165056268-165079308 (+)
CAST/EiJ ENSTCUG00005009101
 lncRNA gene Chr2:168748690-168775999 (+)
CBA/J ENSMUSG00210045406
 lncRNA gene Chr2:170329860-170357346 (+)
DBA/2J ENSMUSG00185026210
 lncRNA gene Chr2:170043427-170070928 (+)
FVB/NJ ENSMUSG00205026170
 lncRNA gene Chr2:169099717-169127408 (+)
JF1/MsJ ENSUMUG00000048457
 lncRNA gene Chr2:169728193-169756544 (+)
LP/J ENSMUSG00230012890
 lncRNA gene Chr2:171620973-171648696 (+)
NOD/ShiLtJ ENSMUSG00190046289
 lncRNA gene Chr2:169728708-169756107 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010038266
 lncRNA gene Chr2:169626692-169654273 (+)
SPRET/EiJ ENSMSPG00010029553
 lncRNA gene Chr2:172379747-172406835 (+)
WSB/EiJ ENSIUOG00005026891
 lncRNA gene Chr2:169471971-169499470 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    8
Sequences &
Gene Models
less
  • All Sequences
    79
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 74161 NCBI Gene Model | MGI Sequence Detail 8456 C57BL/6J ±  kb
transcript NR_040321 RefSeq | MGI Sequence Detail 3476 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:340200 Bast-Habersbrunner A, et al., LncRNA Ctcflos orchestrates transcription and alternative splicing in thermogenic adipogenesis. EMBO Rep. 2021 Jul 5;22(7):e51289
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory