Slc35f5 Gene Detail

Summary

• Symbol
  Slc35f5
• Name
  solute carrier family 35, member F5
• Synonyms
  1300003P13Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1921400
  NCBI Gene: 74150
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:125488332-125523557 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 54.70 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  333 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921400	protein coding gene	Chr1:125488275-125523571 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016415	protein coding gene	Chr1:128655748-128692204 (+)
A/J	MGP_AJ_G0016398	protein coding gene	Chr1:123920453-123956211 (+)
AKR/J	MGP_AKRJ_G0016363	protein coding gene	Chr1:127545386-127580990 (+)
BALB/cJ	MGP_BALBcJ_G0016358	protein coding gene	Chr1:124270205-124307517 (+)
C3H/HeJ	MGP_C3HHeJ_G0016184	protein coding gene	Chr1:127743223-127781044 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016819	protein coding gene	Chr1:133516329-133553381 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014532	protein coding gene	Chr1:117323489-117358812 (+)
CAST/EiJ	MGP_CASTEiJ_G0015765	protein coding gene	Chr1:126648252-126684639 (+)
CBA/J	MGP_CBAJ_G0016157	protein coding gene	Chr1:138033125-138068207 (+)
DBA/2J	MGP_DBA2J_G0016263	protein coding gene	Chr1:122925737-122961653 (+)
FVB/NJ	MGP_FVBNJ_G0016262	protein coding gene	Chr1:121666220-121702077 (+)
LP/J	MGP_LPJ_G0016334	protein coding gene	Chr1:130000425-130035430 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016287	protein coding gene	Chr1:143969341-144007401 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016855	protein coding gene	Chr1:127319734-127356474 (+)
PWK/PhJ	MGP_PWKPhJ_G0015551	protein coding gene	Chr1:121898048-121934376 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015339	protein coding gene	Chr1:126250228-126285646 (+)
WSB/EiJ	MGP_WSBEiJ_G0015827	protein coding gene	Chr1:127262303-127303705 (+)

Homology

• Human Ortholog
  SLC35F5, solute carrier family 35 member F5

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SLC35F5, solute carrier family 35 member F5
  
• Links
  HGNC:23617

  NCBI Gene ID: 80255

  neXtProt AC: NX_Q8WV83

  UniProt: Q8WV83

  
  
• Chr Location
  2q14.1; chr2:113702682-113756693 (-)  GRCh38

---

• MGI Vertebrate Homology
  Slc35f5 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: SLC35F5
• Gene Tree
  Slc35f5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  12 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  4
• Genomic Mutations
  3 involving Slc35f5
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  30 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  718
• Tissues
  7
• cDNA Data
  55
• Literature Summary
  2

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase slc35f5

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  8
• UniProt
  3
• CCDS
  CCDS35694.1

• Ensembl
  ENSMUSG00000026342 (Evidence)
• NCBI Gene
  74150

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000026342	Ensembl Gene Model | MGI Sequence Detail	35226	C57BL/6J
transcript	ENSMUST00000027580	Ensembl | MGI Sequence Detail	2733	Not Applicable
polypeptide	ENSMUSP00000027580	Ensembl | MGI Sequence Detail	524	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000015109 solute carrier family 35 member F5
  (term hierarchy)
• InterPro Domains
  IPR000620 EamA domain

Molecular
Reagents

• All nucleic 57

  cDNA 56

  Primer pair 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2138308

References

• Summaries
  All 35

  Developmental Gene Expression 2

  Gene Ontology 1

  Phenotypes 12
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Slc35f5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8442	Chr1:125488747-125488832 (+)	458 bp
Tssr8443	Chr1:125488838-125488859 (+)	517 bp