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Slc35f5 Gene Detail
Summary
  • Symbol
    Slc35f5
  • Name
    solute carrier family 35, member F5
  • Synonyms
    1300003P13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921400
    NCBI Gene: 74150
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:125488332-125523557 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 1, 54.70 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    333 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921400
protein coding gene Chr1:125488275-125523571 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016415
protein coding gene Chr1:128655748-128692204 (+)
A/J MGP_AJ_G0016398
protein coding gene Chr1:123920453-123956211 (+)
AKR/J MGP_AKRJ_G0016363
protein coding gene Chr1:127545386-127580990 (+)
BALB/cJ MGP_BALBcJ_G0016358
protein coding gene Chr1:124270205-124307517 (+)
C3H/HeJ MGP_C3HHeJ_G0016184
protein coding gene Chr1:127743223-127781044 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016819
protein coding gene Chr1:133516329-133553381 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014532
protein coding gene Chr1:117323489-117358812 (+)
CAST/EiJ MGP_CASTEiJ_G0015765
protein coding gene Chr1:126648252-126684639 (+)
CBA/J MGP_CBAJ_G0016157
protein coding gene Chr1:138033125-138068207 (+)
DBA/2J MGP_DBA2J_G0016263
protein coding gene Chr1:122925737-122961653 (+)
FVB/NJ MGP_FVBNJ_G0016262
protein coding gene Chr1:121666220-121702077 (+)
LP/J MGP_LPJ_G0016334
protein coding gene Chr1:130000425-130035430 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016287
protein coding gene Chr1:143969341-144007401 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016855
protein coding gene Chr1:127319734-127356474 (+)
PWK/PhJ MGP_PWKPhJ_G0015551
protein coding gene Chr1:121898048-121934376 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015339
protein coding gene Chr1:126250228-126285646 (+)
WSB/EiJ MGP_WSBEiJ_G0015827
protein coding gene Chr1:127262303-127303705 (+)



Homology
more
  • Human Ortholog
    SLC35F5, solute carrier family 35 member F5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC35F5, solute carrier family 35 member F5
  • Links
    NCBI Gene ID: 80255
    neXtProt AC: NX_Q8WV83
    UniProt: Q8WV83

  • Chr Location
    2q14.1; chr2:113702682-113756693 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026342 Ensembl Gene Model | MGI Sequence Detail 35226 C57BL/6J ±  kb
    transcript ENSMUST00000027580 Ensembl | MGI Sequence Detail 2733 Not Applicable  
    polypeptide ENSMUSP00000027580 Ensembl | MGI Sequence Detail 524 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 57
      cDNA 56
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2138308
    References
    more
    • Summaries
      All 36
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 12
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    02/20/2024
    MGI 6.23
    The Jackson Laboratory