Tbc1d22bos Gene Detail

Summary

• Symbol
  Tbc1d22bos
• Name
  TBC1 domain family, member 22B, opposite strand
• Synonyms
  0610038L08Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921342
  NCBI Gene: 74092
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:29797790-29815279 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 15.44 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  665 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921342	antisense lncRNA gene	Chr17:29797781-29815279 (-)
129S1/SvImJ	ENSMUSG00200054373	lncRNA gene	Chr17:25452959-25470214 (-)
A/J	ENSMUSG00195054485	lncRNA gene	Chr17:26274310-26291546 (-)
AKR/J	ENSMUSG00220053654	lncRNA gene	Chr17:25322001-25339231 (-)
BALB/cJ	ENSMUSG00180051771	lncRNA gene	Chr17:25755518-25772774 (-)
C3H/HeJ	ENSMUSG00175053831	lncRNA gene	Chr17:25310217-25327451 (-)
C57BL/6NJ	ENSMUSG00215054312	lncRNA gene	Chr17:25313897-25331389 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003009	antisense lncRNA gene	Chr17:25448318-25466489 (-)
CAST/EiJ	ENSTCUG00005051585	lncRNA gene	Chr17:26037027-26054425 (-)
CBA/J	ENSMUSG00210051168	lncRNA gene	Chr17:25148676-25165910 (-)
DBA/2J	ENSMUSG00185055652	lncRNA gene	Chr17:27359113-27376374 (-)
FVB/NJ	ENSMUSG00205053522	lncRNA gene	Chr17:25627302-25644791 (-)
JF1/MsJ	ENSUMUG00000057603	lncRNA gene	Chr17:26827387-26844744 (-)
LP/J	ENSMUSG00230055264	lncRNA gene	Chr17:28878697-28895952 (-)
NOD/ShiLtJ	ENSMUSG00190054237	lncRNA gene	Chr17:25263881-25281122 (-)
NZO/HlLtJ	ENSMUSG00225055102	lncRNA gene	Chr17:30857553-30874800 (-)
PWK/PhJ	ENSLUMG00010053647	lncRNA gene	Chr17:24743434-24760811 (-)
SPRET/EiJ	ENSMSPG00010050970	lncRNA gene	Chr17:26026791-26044290 (-)
WSB/EiJ	ENSIUOG00005051414	lncRNA gene	Chr17:26023479-26040959 (-)

Homology

• Gene Tree
  Tbc1d22bos
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000089900 (Evidence)
• NCBI Gene
  74092

Representative Sequences			Length	Strain/Species
genomic	74092	NCBI Gene Model | MGI Sequence Detail	17490	C57BL/6J
transcript	NR_045447	RefSeq | MGI Sequence Detail	1349	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Tbc1d22bos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147232	Chr17:29798403-29798425 (-)	16,865 bp