4933407I05Rik Gene Detail

Summary

• Symbol
  4933407I05Rik
• Name
  RIKEN cDNA 4933407I05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921322
  NCBI Gene: 74072
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:51825729-51838303 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  503 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921322	lncRNA gene	Chr9:51825680-51838326 (+)
129S1/SvImJ	ENSMUSG00200018923	lncRNA gene	Chr9:48985794-48998257 (+)
A/J	ENSMUSG00195024588	lncRNA gene	Chr9:48671483-48683943 (+)
AKR/J	ENSMUSG00220042379	lncRNA gene	Chr9:48769069-48781651 (+)
BALB/cJ	ENSMUSG00180032857	lncRNA gene	Chr9:48782836-48795296 (+)
C3H/HeJ	ENSMUSG00175015947	lncRNA gene	Chr9:48794822-48807279 (+)
C57BL/6NJ	ENSMUSG00215037780	lncRNA gene	Chr9:48753472-48766054 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016220	lncRNA gene	Chr9:48725042-48737616 (+)
CBA/J	ENSMUSG00210016991	lncRNA gene	Chr9:48871492-48884100 (+)
DBA/2J	ENSMUSG00185012371	lncRNA gene	Chr9:48909259-48921716 (+)
FVB/NJ	ENSMUSG00205044595	lncRNA gene	Chr9:49151362-49163970 (+)
JF1/MsJ	ENSUMUG00000043370	lncRNA gene	Chr9:48963483-48976044 (+)
LP/J	ENSMUSG00230042623	lncRNA gene	Chr9:49197207-49209670 (+)
NOD/ShiLtJ	ENSMUSG00190025926	lncRNA gene	Chr9:48989290-49001745 (+)
NZO/HlLtJ	ENSMUSG00225044342	lncRNA gene	Chr9:49165604-49178203 (+)
PWK/PhJ	ENSLUMG00010022479	lncRNA gene	Chr9:48924339-48936871 (+)
SPRET/EiJ	ENSMSPG00010011845	lncRNA gene	Chr9:49783176-49799909 (+)
WSB/EiJ	ENSIUOG00005021146	lncRNA gene	Chr9:48396345-48408783 (+)

Homology

• Gene Tree
  4933407I05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  1

• Ensembl
  ENSMUSG00000111836 (Evidence)
• NCBI Gene
  74072

Representative Sequences			Length	Strain/Species
genomic	74072	NCBI Gene Model | MGI Sequence Detail	12575	C57BL/6J
transcript	NR_040731	RefSeq | MGI Sequence Detail	796	ZRU/MplStud

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933407I05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85095	Chr9:51825721-51825734 (+)	-1 bp
Tssr85096	Chr9:51825739-51825767 (+)	24 bp