4933404K08Rik Gene Detail

Summary

• Symbol
  4933404K08Rik
• Name
  RIKEN cDNA 4933404K08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921311
  NCBI Gene: 74061
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:23462520-23466437 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921311	lncRNA gene	Chr13:23462520-23466437 (+)
129S1/SvImJ	ENSMUSG00200030907	lncRNA gene	Chr13:20570978-20574896 (+)
A/J	ENSMUSG00195039885	lncRNA gene	Chr13:19720114-19724033 (+)
AKR/J	ENSMUSG00220034768	lncRNA gene	Chr13:19508892-19512810 (+)
BALB/cJ	ENSMUSG00180023766	lncRNA gene	Chr13:20038610-20042528 (+)
C3H/HeJ	ENSMUSG00175038969	lncRNA gene	Chr13:20044940-20048858 (+)
C57BL/6NJ	ENSMUSG00215014460	lncRNA gene	Chr13:20219528-20223448 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011103	lncRNA gene	Chr13:20223275-20227198 (+)
CBA/J	ENSMUSG00210031426	lncRNA gene	Chr13:20000227-20004145 (+)
DBA/2J	ENSMUSG00185021166	lncRNA gene	Chr13:20849957-20853875 (+)
FVB/NJ	ENSMUSG00205051966	lncRNA gene	Chr13:19831760-19835680 (+)
JF1/MsJ	ENSUMUG00000024859	lncRNA gene	Chr13:20498215-20502745 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190025706	lncRNA gene	Chr13:19845768-19850292 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010033046	lncRNA gene	Chr13:19397536-19402062 (+)
SPRET/EiJ	ENSMSPG00010021224	lncRNA gene	Chr13:19173432-19177423 (+)
WSB/EiJ	ENSIUOG00005037430	lncRNA gene	Chr13:19340052-19343972 (+)

Homology

• Gene Tree
  4933404K08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933404K08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085122 (Evidence)
• NCBI Gene
  74061

Representative Sequences			Length	Strain/Species
genomic	74061	NCBI Gene Model | MGI Sequence Detail	3918	C57BL/6J
transcript	NR_046038	RefSeq | MGI Sequence Detail	1434	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Gene Ontology 1

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44