Phf8-ps Pseudogene Detail

Summary

• Symbol
  Phf8-ps
• Name
  PHD finger protein 8, pseudogene
• Synonyms
  4921501E09Rik

• Feature Type
  pseudogene
• IDs
  MGI:1921292
  NCBI Gene: 74042
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:33283117-33286999 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921292	pseudogene	Chr17:33283117-33287014 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023520	protein coding gene	Chr17:32951396-32955311 (-)
A/J	MGP_AJ_G0023478	protein coding gene	Chr17:31856465-31860373 (-)
AKR/J	MGP_AKRJ_G0023444	protein coding gene	Chr17:32172545-32176453 (-)
BALB/cJ	MGP_BALBcJ_G0023483	protein coding gene	Chr17:31960113-31964028 (-)
C3H/HeJ	MGP_C3HHeJ_G0023245	protein coding gene	Chr17:32560306-32564214 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023926	protein coding gene	Chr17:34078020-34081935 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021400	protein coding gene	Chr17:29117016-29120962 (-)
CAST/EiJ	MGP_CASTEiJ_G0022746	protein coding gene	Chr17:32677250-32681161 (-)
CBA/J	MGP_CBAJ_G0023219	protein coding gene	Chr17:35591823-35595731 (-)
DBA/2J	MGP_DBA2J_G0023349	protein coding gene	Chr17:31237694-31241609 (-)
FVB/NJ	MGP_FVBNJ_G0023319	protein coding gene	Chr17:31044689-31048597 (-)
LP/J	MGP_LPJ_G0023428	protein coding gene	Chr17:33173692-33177607 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023338	protein coding gene	Chr17:34567209-34571117 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023968	protein coding gene	Chr17:32541774-32545689 (-)
PWK/PhJ	MGP_PWKPhJ_G0022493	protein coding gene	Chr17:30159745-30163659 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0022313	protein coding gene	Chr17:30510707-30514660 (-)
WSB/EiJ	MGP_WSBEiJ_G0022807	protein coding gene	Chr17:32547150-32551064 (-)

Homology

• Gene Tree
  Phf8-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  32 strains or lines available

Expression

• Assay Results
  730
• Tissues
  15
• cDNA Data
  6
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Phf8-ps interacts with 229 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS28624.1

• Ensembl
  ENSMUSG00000023350 (Evidence)
• NCBI Gene
  74042

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000023350	Ensembl Gene Model | MGI Sequence Detail	3883	C57BL/6J
transcript	ENSMUST00000234144	Ensembl | MGI Sequence Detail	3883	Not Applicable
polypeptide	B9EKK1	UniProt | EBI | MGI Sequence Detail	908	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR003347 JmjC domain
  IPR041070 Jumonji, helical domain
  IPR013087 Zinc finger C2H2-type
  IPR011011 Zinc finger, FYVE/PHD-type
  IPR019787 Zinc finger, PHD-finger
  IPR001965 Zinc finger, PHD-type
  IPR019786 Zinc finger, PHD-type, conserved site
  IPR013083 Zinc finger, RING/FYVE/PHD-type

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Phf8-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147432	Chr17:33287009-33287017 (-)	-14 bp
Tssr147431	Chr17:33286976-33286981 (-)	20 bp