Brip1os Gene Detail

Summary

• Symbol
  Brip1os
• Name
  BRCA1 interacting protein C-terminal helicase 1, opposite strand
• Synonyms
  4632419I22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921288
  NCBI Gene: 74038
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:86092186-86195269 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.71 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  433 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921288	antisense lncRNA gene	Chr11:86092137-86195269 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003028	antisense lncRNA gene	Chr11:87745547-87854787 (+)
A/J	MGP_AJ_G0003005	antisense lncRNA gene	Chr11:84367745-84472908 (+)
AKR/J	MGP_AKRJ_G0002986	antisense lncRNA gene	Chr11:86895889-87005244 (+)
BALB/cJ	MGP_BALBcJ_G0002992	antisense lncRNA gene	Chr11:84757572-84862023 (+)
C3H/HeJ	MGP_C3HHeJ_G0002948	antisense lncRNA gene	Chr11:86924865-87032056 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003134	antisense lncRNA gene	Chr11:90403821-90517453 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002673	antisense lncRNA gene	Chr11:81403864-81505672 (+)
CAST/EiJ	MGP_CASTEiJ_G0002918	antisense lncRNA gene	Chr11:87584682-87693476 (+)
CBA/J	MGP_CBAJ_G0002945	antisense lncRNA gene	Chr11:94197751-94317004 (+)
DBA/2J	MGP_DBA2J_G0002951	antisense lncRNA gene	Chr11:83940839-84047381 (+)
FVB/NJ	MGP_FVBNJ_G0002970	antisense lncRNA gene	Chr11:83448008-83551349 (+)
LP/J	MGP_LPJ_G0003027	antisense lncRNA gene	Chr11:88239738-88345715 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002958	antisense lncRNA gene	Chr11:94320557-94439767 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003138	antisense lncRNA gene	Chr11:87142269-87252493 (+)
PWK/PhJ	MGP_PWKPhJ_G0002877	antisense lncRNA gene	Chr11:84735999-84838221 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002822	antisense lncRNA gene	Chr11:86688947-86794533 (+)
WSB/EiJ	MGP_WSBEiJ_G0002948	antisense lncRNA gene	Chr11:87018198-87125904 (+)

Homology

• Gene Tree
  Brip1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  20
• Chemically induced (other)
  1
• Gene trapped
  18
• Targeted
  1
• Genomic Mutations
  2 involving Brip1os
• Find Mice (IMSR)
  18 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000085208 (Evidence)
• NCBI Gene
  74038

Representative Sequences			Length	Strain/Species
genomic	74038	NCBI Gene Model | MGI Sequence Detail	103084	C57BL/6J
transcript	NR_130958	RefSeq | MGI Sequence Detail	4433	C57BL/6
polypeptide	Q6NXM5	UniProt | EBI | MGI Sequence Detail	282	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR008981 F-MuLV receptor-binding
  IPR018154 TLV/ENV coat polyprotein

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 7

References

• Summaries
  All 31

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363

TSS for Brip1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103865	Chr11:86092158-86092225 (+)	6 bp
Tssr103866	Chr11:86092251-86092270 (+)	75 bp
Tssr103867	Chr11:86102930-86102934 (+)	10,746 bp