Brip1os Gene Detail

Summary

• Symbol
  Brip1os
• Name
  BRCA1 interacting protein C-terminal helicase 1, opposite strand
• Synonyms
  4632419I22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921288
  NCBI Gene: 74038
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:86092186-86195269 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.71 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2041 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921288	antisense lncRNA gene	Chr11:86092109-86195269 (+)
129S1/SvImJ	ENSMUSG00200020384	lncRNA gene	Chr11:83240090-83343016 (+)
A/J	ENSMUSG00195009449	lncRNA gene	Chr11:83094756-83197695 (+)
AKR/J	ENSMUSG00220012483	lncRNA gene	Chr11:83293790-83397109 (+)
AKR/J	ENSMUSG00220011947	protein coding gene	Chr11:83293707-83351498 (+)
BALB/cJ	ENSMUSG00180011292	protein coding gene	Chr11:83283540-83341339 (+)
BALB/cJ	ENSMUSG00180011584	lncRNA gene	Chr11:83283623-83386772 (+)
C3H/HeJ	ENSMUSG00175033353	lncRNA gene	Chr11:83241481-83344414 (+)
C57BL/6NJ	ENSMUSG00215028728	lncRNA gene	Chr11:82867477-82970618 (+)
C57BL/6NJ	ENSMUSG00215012758	protein coding gene	Chr11:82867394-82925190 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002673	antisense lncRNA gene	Chr11:81403864-81505672 (+)
CAST/EiJ	ENSTCUG00005017503	lncRNA gene	Chr11:82784926-82887542 (+)
CBA/J	ENSMUSG00210042370	lncRNA gene	Chr11:83059077-83161986 (+)
DBA/2J	ENSMUSG00185017900	protein coding gene	Chr11:83375166-83432945 (+)
DBA/2J	ENSMUSG00185020044	lncRNA gene	Chr11:83375249-83478565 (+)
FVB/NJ	ENSMUSG00205011312	protein coding gene	Chr11:83171533-83229326 (+)
FVB/NJ	ENSMUSG00205022871	lncRNA gene	Chr11:83171616-83274752 (+)
JF1/MsJ	ENSUMUG00000030978	lncRNA gene	Chr11:83696544-83796532 (+)
LP/J	ENSMUSG00230030020	lncRNA gene	Chr11:84409123-84512046 (+)
NOD/ShiLtJ	ENSMUSG00190017862	protein coding gene	Chr11:83383462-83441248 (+)
NOD/ShiLtJ	ENSMUSG00190020880	lncRNA gene	Chr11:83383545-83486680 (+)
NZO/HlLtJ	ENSMUSG00225040180	lncRNA gene	Chr11:86519363-86622452 (+)
NZO/HlLtJ	ENSMUSG00225038185	protein coding gene	Chr11:86519280-86577058 (+)
PWK/PhJ	ENSLUMG00010033707	lncRNA gene	Chr11:83196685-83295947 (+)
SPRET/EiJ	ENSMSPG00010030312	lncRNA gene	Chr11:83663316-83766577 (+)
WSB/EiJ	ENSIUOG00005008122	lncRNA gene	Chr11:83202985-83306016 (+)

Homology

• Gene Tree
  Brip1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  20
• Chemically induced (other)
  1
• Gene trapped
  18
• Targeted
  1
• Genomic Mutations
  2 involving Brip1os
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000085208 (Evidence)
• NCBI Gene
  74038

Representative Sequences			Length	Strain/Species
genomic	74038	NCBI Gene Model | MGI Sequence Detail	103084	C57BL/6J
transcript	NR_130958	RefSeq | MGI Sequence Detail	4433	C57BL/6
polypeptide	Q6NXM5	UniProt | EBI | MGI Sequence Detail	282	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR008981 F-MuLV receptor-binding
  IPR018154 TLV/ENV coat polyprotein

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 7

References

• Summaries
  All 31

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363

TSS for Brip1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103865	Chr11:86092158-86092225 (+)	6 bp
Tssr103866	Chr11:86092251-86092270 (+)	75 bp
Tssr103867	Chr11:86102930-86102934 (+)	10,746 bp