4632404H12Rik Gene Detail

Summary

• Symbol
  4632404H12Rik
• Name
  RIKEN cDNA 4632404H12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921284
  NCBI Gene: 74034
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:89674818-89680700 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.19 cM, cytoband F2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921284	lncRNA gene	Chr3:89674818-89680707 (-)
129S1/SvImJ	ENSMUSG00200039457	protein coding gene	Chr3:86530131-86535916 (-)
129S1/SvImJ	ENSMUSG00200039946	lncRNA gene	Chr3:86530126-86535915 (-)
A/J	ENSMUSG00195053752	lncRNA gene	Chr3:86545269-86551058 (-)
A/J	ENSMUSG00195052387	protein coding gene	Chr3:86545274-86551059 (-)
AKR/J	ENSMUSG00220051780	lncRNA gene	Chr3:86499791-86505580 (-)
AKR/J	ENSMUSG00220049824	protein coding gene	Chr3:86499796-86505581 (-)
BALB/cJ	ENSMUSG00180049289	lncRNA gene	Chr3:86637002-86642791 (-)
BALB/cJ	ENSMUSG00180045917	protein coding gene	Chr3:86637007-86642792 (-)
C3H/HeJ	ENSMUSG00175048823	lncRNA gene	Chr3:86477840-86483629 (-)
C3H/HeJ	ENSMUSG00175043089	protein coding gene	Chr3:86477845-86483630 (-)
C57BL/6NJ	ENSMUSG00215050665	lncRNA gene	Chr3:86917870-86923659 (-)
C57BL/6NJ	ENSMUSG00215045597	protein coding gene	Chr3:86917875-86923660 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005671	lincRNA gene	Chr3:82510944-82517122 (-)
CAST/EiJ	ENSTCUG00005048830	lncRNA gene	Chr3:85997188-86002973 (-)
CBA/J	ENSMUSG00210043869	protein coding gene	Chr3:86615490-86621275 (-)
CBA/J	ENSMUSG00210047608	lncRNA gene	Chr3:86615485-86621274 (-)
DBA/2J	ENSMUSG00185052906	lncRNA gene	Chr3:86725432-86731221 (-)
DBA/2J	ENSMUSG00185051304	protein coding gene	Chr3:86725437-86731222 (-)
FVB/NJ	ENSMUSG00205050802	lncRNA gene	Chr3:85539452-85545241 (-)
FVB/NJ	ENSMUSG00205028275	protein coding gene	Chr3:85539457-85545242 (-)
JF1/MsJ	ENSUMUG00000051482	lncRNA gene	Chr3:86329539-86335320 (-)
LP/J	ENSMUSG00230036587	lncRNA gene	Chr3:88751389-88757178 (-)
LP/J	ENSMUSG00230028129	protein coding gene	Chr3:88751394-88757179 (-)
NOD/ShiLtJ	ENSMUSG00190049542	lncRNA gene	Chr3:87003987-87009775 (-)
NOD/ShiLtJ	ENSMUSG00190045540	protein coding gene	Chr3:87003992-87009776 (-)
NZO/HlLtJ	ENSMUSG00225012376	lncRNA gene	Chr3:91509521-91515310 (-)
NZO/HlLtJ	ENSMUSG00225008279	protein coding gene	Chr3:91509526-91515311 (-)
PWK/PhJ	ENSLUMG00010052208	lncRNA gene	Chr3:86369868-86375649 (-)
SPRET/EiJ	ENSMSPG00010051113	lncRNA gene	Chr3:87240209-87245821 (-)
WSB/EiJ	ENSIUOG00005050347	lncRNA gene	Chr3:87025248-87031037 (-)

Homology

• Gene Tree
  4632404H12Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4632404H12Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  24

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000042579 (Evidence)
• NCBI Gene
  74034

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042579	Ensembl Gene Model | MGI Sequence Detail	5883	C57BL/6J
transcript	ENSMUST00000195940	Ensembl | MGI Sequence Detail	5273	Not Applicable
polypeptide	Q9D683	UniProt | EBI | MGI Sequence Detail	128	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 3

References

• Summaries
  All 21

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4632404H12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34153	Chr3:89680528-89680586 (-)	143 bp