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Rftn2 Gene Detail
Summary
  • Symbol
    Rftn2
  • Name
    raftlin family member 2
  • Synonyms
    2700010E02Rik, 3222401M22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921263
    NCBI Gene: 74013
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:55209318-55265941 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 28.05 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    302 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921263
 protein coding gene Chr1:55209318-55267128 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016033
 protein coding gene Chr1:54897212-54959647 (-)
A/J MGP_AJ_G0016016
 protein coding gene Chr1:52983619-53041925 (-)
AKR/J MGP_AKRJ_G0015972
 protein coding gene Chr1:54419869-54480114 (-)
BALB/cJ MGP_BALBcJ_G0015971
 protein coding gene Chr1:53032958-53090395 (-)
C3H/HeJ MGP_C3HHeJ_G0015803
 protein coding gene Chr1:54668287-54727461 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016424
 protein coding gene Chr1:57165419-57225458 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014146
 protein coding gene Chr1:49072369-49130976 (-)
CAST/EiJ MGP_CASTEiJ_G0015385
 protein coding gene Chr1:53943553-54010454 (-)
CBA/J MGP_CBAJ_G0015775
 protein coding gene Chr1:58792240-58855865 (-)
DBA/2J MGP_DBA2J_G0015876
 protein coding gene Chr1:52404895-52462125 (-)
FVB/NJ MGP_FVBNJ_G0015878
 protein coding gene Chr1:51752389-51808992 (-)
LP/J MGP_LPJ_G0015948
 protein coding gene Chr1:55722765-55780575 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015898
 protein coding gene Chr1:61884945-61949206 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016471
 protein coding gene Chr1:54370987-54431922 (-)
PWK/PhJ MGP_PWKPhJ_G0015171
 protein coding gene Chr1:51768356-51826671 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014952
 protein coding gene Chr1:54000105-54062476 (-)
WSB/EiJ MGP_WSBEiJ_G0015448
 protein coding gene Chr1:54056609-54118142 (-)



Homology
more
  • Human Ortholog
    RFTN2, raftlin family member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RFTN2, raftlin family member 2
  • Synonyms
    C2orf11, Raftlin-2
  • Links
    NCBI Gene ID: 130132
    neXtProt AC: NX_Q52LD8
    UniProt: Q52LD8

  • Chr Location
    2q33.1; chr2:197568224-197676050 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    32
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025978 Ensembl Gene Model | MGI Sequence Detail 56624 C57BL/6J ±  kb
transcript ENSMUST00000027121 Ensembl | MGI Sequence Detail 3677 Not Applicable  
polypeptide ENSMUSP00000027121 Ensembl | MGI Sequence Detail 500 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    Genomic 1
    cDNA 33

    Microarray probesets 6
Other
Accession IDs
less
MGI:1917671
References
more
  • Summaries
    All 36
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:217538 Lui JH, et al., Radial glia require PDGFD-PDGFRbeta signalling in human but not mouse neocortex. Nature. 2014 Nov 13;515(7526):264-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/14/2023
MGI 6.22 		The Jackson Laboratory