4930444A19Rik Gene Detail

Summary

• Symbol
  4930444A19Rik
• Name
  RIKEN cDNA 4930444A19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921230
  NCBI Gene: 73980
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:54720925-54805515 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2486 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921230	lncRNA gene	Chr1:54720862-54806683 (+)
129S1/SvImJ	ENSMUSG00200018812	lncRNA gene	Chr1:52195826-52281684 (+)
A/J	ENSMUSG00195029648	lncRNA gene	Chr1:51752527-51838376 (+)
AKR/J	ENSMUSG00220042271	lncRNA gene	Chr1:51838461-51924314 (+)
BALB/cJ	ENSMUSG00180014513	lncRNA gene	Chr1:52014057-52099906 (+)
C3H/HeJ	ENSMUSG00175001247	lncRNA gene	Chr1:52127378-52213232 (+)
C57BL/6NJ	ENSMUSG00215034036	lncRNA gene	Chr1:52049396-52135261 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002335	antisense lncRNA gene	Chr1:48583080-48678168 (+)
CAST/EiJ	ENSTCUG00005014437	lncRNA gene	Chr1:51955907-52041087 (+)
CBA/J	ENSMUSG00210054171	lncRNA gene	Chr1:51814239-51900091 (+)
DBA/2J	ENSMUSG00185055324	lncRNA gene	Chr1:52933841-53019696 (+)
FVB/NJ	ENSMUSG00205022261	lncRNA gene	Chr1:51775910-51861761 (+)
JF1/MsJ	ENSUMUG00000047364	lncRNA gene	Chr1:51890657-51975608 (+)
LP/J	ENSMUSG00230029494	lncRNA gene	Chr1:52942962-53028815 (+)
NOD/ShiLtJ	ENSMUSG00190043904	lncRNA gene	Chr1:51961022-52046874 (+)
NZO/HlLtJ	ENSMUSG00225009893	lncRNA gene	Chr1:56139388-56233208 (+)
PWK/PhJ	ENSLUMG00010025933	lncRNA gene	Chr1:51456822-51541924 (+)
SPRET/EiJ	ENSMSPG00010028056	lncRNA gene	Chr1:53236409-53321329 (+)
WSB/EiJ	ENSIUOG00005021956	lncRNA gene	Chr1:51620438-51707271 (+)

Homology

• Gene Tree
  4930444A19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930444A19Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  4

• Ensembl
  ENSMUSG00000101674 (Evidence)
• NCBI Gene
  73980

Representative Sequences			Length	Strain/Species
genomic	73980	NCBI Gene Model | MGI Sequence Detail	84591	C57BL/6J
transcript	NR_190090	RefSeq | MGI Sequence Detail	1105	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930444A19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6705	Chr1:54720919-54720929 (+)	-1 bp