4930434J08Rik Gene Detail

Summary

• Symbol
  4930434J08Rik
• Name
  RIKEN cDNA 4930434J08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921229
  NCBI Gene: 108167886
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:20691258-20693375 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921229	lncRNA gene	Chr11:20690632-20693389 (+)
129S1/SvImJ	ENSMUSG00200022705	lncRNA gene	Chr11:17704007-17705199 (+)
A/J	ENSMUSG00195005366	lncRNA gene	Chr11:17554423-17555621 (+)
AKR/J	ENSMUSG00220003580	lncRNA gene	Chr11:17638814-17640006 (+)
BALB/cJ	ENSMUSG00180004149	lncRNA gene	Chr11:17543418-17544616 (+)
C3H/HeJ	ENSMUSG00175008321	lncRNA gene	Chr11:17569846-17571038 (+)
C57BL/6NJ	ENSMUSG00215003605	lncRNA gene	Chr11:17633109-17634301 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007578	lncRNA gene	Chr11:17506866-17508058 (+)
CBA/J	ENSMUSG00210009334	lncRNA gene	Chr11:17547142-17548342 (+)
DBA/2J	ENSMUSG00185011858	lncRNA gene	Chr11:17661299-17662491 (+)
FVB/NJ	ENSMUSG00205004967	lncRNA gene	Chr11:17613329-17614522 (+)
JF1/MsJ	ENSUMUG00000005806	lncRNA gene	Chr11:17853630-17854822 (+)
LP/J	ENSMUSG00230004363	lncRNA gene	Chr11:18693636-18694834 (+)
NOD/ShiLtJ	ENSMUSG00190008868	lncRNA gene	Chr11:17683981-17685173 (+)
NZO/HlLtJ	ENSMUSG00225022151	lncRNA gene	Chr11:20723873-20725065 (+)
PWK/PhJ	ENSLUMG00010012170	lncRNA gene	Chr11:17512288-17513479 (+)
SPRET/EiJ	ENSMSPG00010018956	lncRNA gene	Chr11:17780570-17781760 (+)
WSB/EiJ	ENSIUOG00005010440	lncRNA gene	Chr11:17592901-17594101 (+)

Homology

• Gene Tree
  4930434J08Rik
  

Expression

• Assay Results
  6
• Tissues
  2
• cDNA Data
  5
• Literature Summary
  1

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120343 (Evidence)
• NCBI Gene
  108167886

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120343	Ensembl Gene Model | MGI Sequence Detail	2118	C57BL/6J
transcript	ENSMUST00000242679	Ensembl | MGI Sequence Detail	2118	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 5

  Other 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:5825909

References

• Summaries
  All 12

  Developmental Gene Expression 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107

TSS for 4930434J08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100521	Chr11:20690587-20690645 (+)	-642 bp
Tssr100522	Chr11:20690654-20690681 (+)	-590 bp
Tssr100523	Chr11:20690693-20690725 (+)	-549 bp
Tssr100524	Chr11:20691754-20691787 (+)	513 bp
Tssr100525	Chr11:20692299-20692309 (+)	1,046 bp