4930452L12Rik Gene Detail

Summary

• Symbol
  4930452L12Rik
• Name
  RIKEN cDNA 4930452L12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921224
  NCBI Gene: 73974
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:56312428-56314001 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921224	lncRNA gene	Chr10:56312428-56314001 (-)
129S1/SvImJ	ENSMUSG00200029664	lncRNA gene	Chr10:53225253-53226502 (-)
A/J	ENSMUSG00195028069	lncRNA gene	Chr10:53479083-53480332 (-)
AKR/J	ENSMUSG00220042027	lncRNA gene	Chr10:53190911-53192160 (-)
BALB/cJ	ENSMUSG00180028552	lncRNA gene	Chr10:53608512-53609761 (-)
C3H/HeJ	ENSMUSG00175026058	lncRNA gene	Chr10:53444902-53446151 (-)
C57BL/6NJ	ENSMUSG00215030052	lncRNA gene	Chr10:53130995-53132244 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030004	lncRNA gene	Chr10:53279445-53280695 (-)
CBA/J	ENSMUSG00210037630	lncRNA gene	Chr10:53257020-53258269 (-)
DBA/2J	ENSMUSG00185042458	lncRNA gene	Chr10:53408906-53410155 (-)
FVB/NJ	ENSMUSG00205034250	lncRNA gene	Chr10:53320416-53321665 (-)
JF1/MsJ	ENSUMUG00000022859	lncRNA gene	Chr10:53030701-53031952 (-)
LP/J	ENSMUSG00230023782	lncRNA gene	Chr10:55210089-55211338 (-)
NOD/ShiLtJ	ENSMUSG00190038074	lncRNA gene	Chr10:53590654-53591903 (-)
NZO/HlLtJ	ENSMUSG00225022717	lncRNA gene	Chr10:59492004-59493255 (-)
PWK/PhJ	ENSLUMG00010024079	lncRNA gene	Chr10:53247626-53248877 (-)
SPRET/EiJ	ENSMSPG00010027407	lncRNA gene	Chr10:54799725-54800976 (-)
WSB/EiJ	ENSIUOG00005043493	lncRNA gene	Chr10:53233932-53235184 (-)

Homology

• Gene Tree
  4930452L12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000112175 (Evidence)
• NCBI Gene
  73974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112175	Ensembl Gene Model | MGI Sequence Detail	1574	C57BL/6J
transcript	ENSMUST00000220158	Ensembl | MGI Sequence Detail	856	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573