Speer9-ps1 Pseudogene Detail

Summary

• Symbol
  Speer9-ps1
• Name
  spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1
• Synonyms
  4930415A14Rik, SPEER-9

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1921199
  NCBI Gene: 73949
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:3178146-3194832 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 1.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921199	pseudogene	Chr7:3178146-3194832 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0007248	lincRNA gene	Chr7:52-15569 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0007008	lincRNA gene	Chr7:30852-72395 (+)
DBA/2J	MGP_DBA2J_G0007030	lincRNA gene	Chr7:2806-27833 (+)
FVB/NJ	MGP_FVBNJ_G0007053	lincRNA gene	Chr7:5218-33497 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0007033	lincRNA gene	Chr7:23855-48644 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0006787	lincRNA gene	Chr7:42750-74336 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Speer9-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  31 phenotype references
  

• All Mutations and Alleles
  1
• Transgenic
  1
• Genomic Mutations
  1 involving Speer9-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000107956 (Evidence)
• NCBI Gene
  73949

Representative Sequences			Length	Strain/Species
genomic	73949	NCBI Gene Model | MGI Sequence Detail	16687	C57BL/6J
transcript	NR_001583	RefSeq | MGI Sequence Detail	775	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 39

  Diseases 1

  Phenotypes 31
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:321576 Colombo S, et al., Stabilization of beta-catenin promotes melanocyte specification at the expense of the Schwann cell lineage. Development. 2022 Jan 15;149(2):dev194407