4930412B13Rik Gene Detail

Summary

• Symbol
  4930412B13Rik
• Name
  RIKEN cDNA 4930412B13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921188
  NCBI Gene: 73938
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:117652409-117739617 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2291 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921188	lncRNA gene	Chr2:117652409-117739617 (+)
129S1/SvImJ	ENSMUSG00200048988	lncRNA gene	Chr2:114588365-114675584 (+)
A/J	ENSMUSG00195025981	lncRNA gene	Chr2:114636633-114726751 (+)
AKR/J	ENSMUSG00220044314	lncRNA gene	Chr2:114517559-114604802 (+)
BALB/cJ	ENSMUSG00180044740	lncRNA gene	Chr2:114441776-114531895 (+)
C3H/HeJ	ENSMUSG00175029210	lncRNA gene	Chr2:114892786-114979940 (+)
C57BL/6NJ	ENSMUSG00215030603	lncRNA gene	Chr2:114567390-114654605 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005463	lincRNA gene	Chr2:110652355-110723663 (+)
CAST/EiJ	ENSTCUG00005017459	lncRNA gene	Chr2:113838986-113926024 (+)
CBA/J	ENSMUSG00210007672	lncRNA gene	Chr2:114733827-114820987 (+)
DBA/2J	ENSMUSG00185048461	lncRNA gene	Chr2:114438498-114528615 (+)
FVB/NJ	ENSMUSG00205042389	lncRNA gene	Chr2:113651786-113743145 (+)
JF1/MsJ	ENSUMUG00000042948	lncRNA gene	Chr2:114306111-114393184 (+)
LP/J	ENSMUSG00230023708	lncRNA gene	Chr2:116248153-116335363 (+)
NOD/ShiLtJ	ENSMUSG00190047507	lncRNA gene	Chr2:114661899-114749053 (+)
NZO/HlLtJ	ENSMUSG00225004659	lncRNA gene	Chr2:124140489-124227640 (+)
PWK/PhJ	ENSLUMG00010049196	lncRNA gene	Chr2:114216203-114302961 (+)
SPRET/EiJ	ENSMSPG00010044850	lncRNA gene	Chr2:116595054-116678361 (+)
WSB/EiJ	ENSIUOG00005029906	lncRNA gene	Chr2:114397556-114484806 (+)

Homology

• Gene Tree
  4930412B13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930412B13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086221 (Evidence)
• NCBI Gene
  73938

Representative Sequences			Length	Strain/Species
genomic	73938	NCBI Gene Model | MGI Sequence Detail	87209	C57BL/6J
transcript	NR_040631	RefSeq | MGI Sequence Detail	1276	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930412B13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19522	Chr2:117716879-117716882 (+)	64,472 bp