4833407H14Rik Gene Detail

Summary

• Symbol
  4833407H14Rik
• Name
  RIKEN cDNA 4833407H14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921149
  NCBI Gene: 73899
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:53449053-53451162 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 47.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921149	lncRNA gene	Chr19:53417683-53451662 (+)
129S1/SvImJ	ENSMUSG00200021893	lncRNA gene	Chr19:50134040-50136242 (+)
A/J	ENSMUSG00195018809	lncRNA gene	Chr19:50308828-50311030 (+)
AKR/J	ENSMUSG00220019596	lncRNA gene	Chr19:50078630-50080832 (+)
BALB/cJ	ENSMUSG00180020165	lncRNA gene	Chr19:50548506-50550709 (+)
C3H/HeJ	ENSMUSG00175006440	lncRNA gene	Chr19:50084085-50086287 (+)
C57BL/6NJ	ENSMUSG00215004968	lncRNA gene	Chr19:50176215-50178420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005314	lincRNA gene	Chr19:49960141-49962188 (+)
CAST/EiJ	ENSTCUG00005017074	lncRNA gene	Chr19:49734778-49736980 (+)
CBA/J	ENSMUSG00210019386	lncRNA gene	Chr19:50163600-50165802 (+)
DBA/2J	ENSMUSG00185028208	lncRNA gene	Chr19:50662066-50664268 (+)
FVB/NJ	ENSMUSG00205035086	lncRNA gene	Chr19:49546901-49549103 (+)
JF1/MsJ	ENSUMUG00000038201	lncRNA gene	Chr19:50856819-50859019 (+)
LP/J	ENSMUSG00230028325	lncRNA gene	Chr19:51415729-51417931 (+)
NOD/ShiLtJ	ENSMUSG00190005617	lncRNA gene	Chr19:50031993-50034186 (+)
NZO/HlLtJ	ENSMUSG00225025587	lncRNA gene	Chr19:55018047-55020249 (+)
PWK/PhJ	ENSLUMG00010001235	lncRNA gene	Chr19:49909691-49911889 (+)
SPRET/EiJ	ENSMSPG00010008395	lncRNA gene	Chr19:49757691-49759917 (+)
WSB/EiJ	ENSIUOG00005006982	lncRNA gene	Chr19:49530409-49532616 (+)

Homology

• Gene Tree
  4833407H14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000097779 (Evidence)
• NCBI Gene
  73899

Representative Sequences			Length	Strain/Species
genomic	73899	NCBI Gene Model | MGI Sequence Detail	2110	C57BL/6J
transcript	NR_167900	RefSeq | MGI Sequence Detail	1214	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4833407H14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156984	Chr19:53449041-53449085 (+)	10 bp