4930415C11Rik Gene Detail

Summary

• Symbol
  4930415C11Rik
• Name
  RIKEN cDNA 4930415C11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921130
  NCBI Gene: 73880
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:59202710-59231907 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1013 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921130	lncRNA gene	Chr13:59202710-59231907 (-)
129S1/SvImJ	ENSMUSG00200017269	lncRNA gene	Chr13:56085517-56114722 (-)
A/J	ENSMUSG00195044433	lncRNA gene	Chr13:55561610-55591018 (-)
AKR/J	ENSMUSG00220045599	lncRNA gene	Chr13:55104407-55133816 (-)
BALB/cJ	ENSMUSG00180017177	lncRNA gene	Chr13:55816421-55845835 (-)
C3H/HeJ	ENSMUSG00175042307	lncRNA gene	Chr13:55602190-55631390 (-)
C57BL/6NJ	ENSMUSG00215039956	lncRNA gene	Chr13:55609789-55638990 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040593	lncRNA gene	Chr13:55983878-56013212 (-)
CBA/J	ENSMUSG00210042786	lncRNA gene	Chr13:55807071-55836271 (-)
DBA/2J	ENSMUSG00185018033	lncRNA gene	Chr13:56651152-56680549 (-)
FVB/NJ	ENSMUSG00205044155	lncRNA gene	Chr13:55422971-55452272 (-)
JF1/MsJ	ENSUMUG00000034357	lncRNA gene	Chr13:56018185-56047560 (-)
LP/J	ENSMUSG00230034110	lncRNA gene	Chr13:65993318-66022714 (-)
NOD/ShiLtJ	ENSMUSG00190034469	lncRNA gene	Chr13:55663071-55692272 (-)
NZO/HlLtJ	ENSMUSG00225034654	lncRNA gene	Chr13:59706223-59735420 (-)
PWK/PhJ	ENSLUMG00010025364	lncRNA gene	Chr13:54943379-54972764 (-)
SPRET/EiJ	ENSMSPG00010041140	lncRNA gene	Chr13:55308755-55337375 (-)
WSB/EiJ	ENSIUOG00005027197	lncRNA gene	Chr13:55124255-55153668 (-)

Homology

• Gene Tree
  4930415C11Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114437 (Evidence)
• NCBI Gene
  73880

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114437	Ensembl Gene Model | MGI Sequence Detail	29198	C57BL/6J
transcript	ENSMUST00000225244	Ensembl | MGI Sequence Detail	537	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930415C11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122862	Chr13:59232044-59232058 (-)	-144 bp