4930429C20Rik Gene Detail

Summary

• Symbol
  4930429C20Rik
• Name
  RIKEN cDNA 4930429C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921107
  NCBI Gene: 73857
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:71658452-71659064 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921107	lncRNA gene	Chr14:71658277-71669467 (+)
129S1/SvImJ	ENSMUSG00200031433	lncRNA gene	Chr14:60043013-60043608 (+)
A/J	ENSMUSG00195015336	lncRNA gene	Chr14:60229579-60230178 (+)
AKR/J	ENSMUSG00220033031	lncRNA gene	Chr14:59558204-59558803 (+)
BALB/cJ	ENSMUSG00180036954	lncRNA gene	Chr14:59838028-59838627 (+)
C3H/HeJ	ENSMUSG00175030478	lncRNA gene	Chr14:61585403-61586002 (+)
C57BL/6NJ	ENSMUSG00215031178	lncRNA gene	Chr14:59787399-59787998 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040159	lncRNA gene	Chr14:61466061-61466656 (+)
CBA/J	ENSMUSG00210043014	lncRNA gene	Chr14:60208746-60209345 (+)
DBA/2J	ENSMUSG00185024728	lncRNA gene	Chr14:65370789-65371388 (+)
FVB/NJ	ENSMUSG00205039660	lncRNA gene	Chr14:59723541-59724136 (+)
JF1/MsJ	ENSUMUG00000045416	lncRNA gene	Chr14:76554371-76554966 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040388	lncRNA gene	Chr14:60003787-60004386 (+)
NZO/HlLtJ	ENSMUSG00225040696	lncRNA gene	Chr14:67730594-67731193 (+)
PWK/PhJ	ENSLUMG00010039293	lncRNA gene	Chr14:59414233-59414828 (+)
SPRET/EiJ	ENSMSPG00010028968	lncRNA gene	Chr14:62983599-62984189 (+)
WSB/EiJ	ENSIUOG00005041971	lncRNA gene	Chr14:59448197-59448796 (+)

Homology

• Gene Tree
  4930429C20Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000115286 (Evidence)
• NCBI Gene
  73857

Representative Sequences			Length	Strain/Species
genomic	73857	NCBI Gene Model | MGI Sequence Detail	613	C57BL/6J
transcript	NR_166771	RefSeq | MGI Sequence Detail	516	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930429C20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4475	Chr14:71658431-71658435 (+)	-19 bp
Tssr126502	Chr14:71658446-71658457 (+)	0 bp