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Snhg6 Gene Detail
Summary
  • Symbol
    Snhg6
  • Name
    small nucleolar RNA host gene 6
  • Synonyms
    1110008H02Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921074
    NCBI Gene: 73824
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:10012250-10014343 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 2.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921074
 lncRNA gene Chr1:9926809-10014398 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004772
 lincRNA gene Chr1:7205673-7207832 (-)
A/J MGP_AJ_G0004753
 lincRNA gene Chr1:7262729-7264888 (-)
AKR/J MGP_AKRJ_G0004732
 lincRNA gene Chr1:7150516-7152675 (-)
BALB/cJ MGP_BALBcJ_G0004735
 lincRNA gene Chr1:6996196-6998377 (-)
C3H/HeJ MGP_C3HHeJ_G0004683
 lincRNA gene Chr1:7071470-7073629 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004885
 lincRNA gene Chr1:7543384-7545543 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004321
 lincRNA gene Chr1:6099807-6101841 (-)
CAST/EiJ MGP_CASTEiJ_G0004640
 lincRNA gene Chr1:7265534-7267695 (-)
CBA/J MGP_CBAJ_G0004676
 lincRNA gene Chr1:7701941-7704100 (-)
DBA/2J MGP_DBA2J_G0004694
 lincRNA gene Chr1:6879433-6881627 (-)
FVB/NJ MGP_FVBNJ_G0004714
 lincRNA gene Chr1:6795966-6798125 (-)
LP/J MGP_LPJ_G0004773
 lincRNA gene Chr1:7421195-7423354 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004699
 lincRNA gene Chr1:8362265-8364425 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004889
 lincRNA gene Chr1:7051782-7053941 (-)
PWK/PhJ MGP_PWKPhJ_G0004592
 lincRNA gene Chr1:6747382-6749526 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004521
 lincRNA gene Chr1:7219424-7221547 (-)
WSB/EiJ MGP_WSBEiJ_G0004681
 lincRNA gene Chr1:7082132-7084287 (-)



Homology
more
  • Human Ortholog
    SNHG6, small nucleolar RNA host gene 6
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG6, small nucleolar RNA host gene 6
  • Synonyms
    HBII-276HG, NCRNA00058, U87HG
  • Links
    NCBI Gene ID: 641638

  • Chr Location
    8q13; chr8:66920561-66926398 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    49
Sequences &
Gene Models
less
  • All Sequences
    49
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73824 NCBI Gene Model | MGI Sequence Detail 2094 C57BL/6J ±  kb
transcript NR_024067 RefSeq | MGI Sequence Detail 407 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:295303 Zhang X, et al., LncRNA SNHG6 functions as a ceRNA to regulate neuronal cell apoptosis by modulating miR-181c-5p/BIM signalling in ischaemic stroke. J Cell Mol Med. 2019 Sep;23(9):6120-6130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory