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Snhg6 Gene Detail
Summary
  • Symbol
    Snhg6
  • Name
    small nucleolar RNA host gene 6
  • Synonyms
    1110008H02Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921074
    NCBI Gene: 73824
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:10012250-10014343 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 2.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    206 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921074
 lncRNA gene Chr1:9926809-10014504 (-)
129S1/SvImJ ENSMUSG00200003041
 lncRNA gene Chr1:7249374-7338767 (-)
A/J ENSMUSG00195002955
 lncRNA gene Chr1:7067099-7156504 (-)
AKR/J ENSMUSG00220003714
 lncRNA gene Chr1:7167484-7256882 (-)
BALB/cJ ENSMUSG00180009130
 lncRNA gene Chr1:7150672-7240073 (-)
C3H/HeJ ENSMUSG00175000343
 lncRNA gene Chr1:7033159-7129660 (-)
C57BL/6NJ ENSMUSG00215004380
 lncRNA gene Chr1:7111204-7198803 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004321
 lincRNA gene Chr1:6099807-6101841 (-)
CAST/EiJ ENSTCUG00005002109
 lncRNA gene Chr1:7487825-7579106 (-)
CBA/J ENSMUSG00210002042
 lncRNA gene Chr1:6892651-6989153 (-)
DBA/2J ENSMUSG00185004566
 lncRNA gene Chr1:7988466-8077877 (-)
FVB/NJ ENSMUSG00205005560
 lncRNA gene Chr1:7244478-7333884 (-)
JF1/MsJ ENSUMUG00000003925
 lncRNA gene Chr1:7275782-7365930 (-)
LP/J ENSMUSG00230002702
 lncRNA gene Chr1:7991084-8080473 (-)
NOD/ShiLtJ ENSMUSG00190001427
 lncRNA gene Chr1:7051874-7141762 (-)
NZO/HlLtJ ENSMUSG00225005932
 lncRNA gene Chr1:11393023-11482432 (-)
PWK/PhJ ENSLUMG00010002375
 lncRNA gene Chr1:6880826-6971095 (-)
SPRET/EiJ ENSMSPG00010014323
 lncRNA gene Chr1:7478276-7570734 (-)
WSB/EiJ ENSIUOG00005011387
 lncRNA gene Chr1:7069092-7156682 (-)



Homology
more
  • Human Ortholog
    SNHG6, small nucleolar RNA host gene 6
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG6, small nucleolar RNA host gene 6
  • Synonyms
    HBII-276HG, NCRNA00058, U87HG
  • Links
    NCBI Gene ID: 641638

  • Chr Location
    8q13; chr8:66895990-66926525 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    49
Sequences &
Gene Models
less
  • All Sequences
    85
  • RefSeq
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic 73824 NCBI Gene Model | MGI Sequence Detail 2094 C57BL/6J ±  kb
transcript NR_202098 RefSeq | MGI Sequence Detail 1183 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:295303 Zhang X, et al., LncRNA SNHG6 functions as a ceRNA to regulate neuronal cell apoptosis by modulating miR-181c-5p/BIM signalling in ischaemic stroke. J Cell Mol Med. 2019 Sep;23(9):6120-6130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory