4930402F11Rik Gene Detail

Summary

• Symbol
  4930402F11Rik
• Name
  RIKEN cDNA 4930402F11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921046
  NCBI Gene: 73796
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:69145842-69149437 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  278 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921046	lncRNA gene	Chr7:69145825-69200532 (+)
129S1/SvImJ	ENSMUSG00200013250	lncRNA gene	Chr7:55885581-55940163 (+)
A/J	ENSMUSG00195013224	lncRNA gene	Chr7:60287891-60342481 (+)
AKR/J	ENSMUSG00220020702	lncRNA gene	Chr7:53791428-53846008 (+)
BALB/cJ	ENSMUSG00180004658	lncRNA gene	Chr7:56997723-57052309 (+)
C3H/HeJ	ENSMUSG00175011322	lncRNA gene	Chr7:57790188-57844767 (+)
C57BL/6NJ	ENSMUSG00215022738	lncRNA gene	Chr7:56923204-56977786 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004511	lncRNA gene	Chr7:60474800-60529403 (+)
CBA/J	ENSMUSG00210019909	lncRNA gene	Chr7:57628614-57683192 (+)
DBA/2J	ENSMUSG00185001044	lncRNA gene	Chr7:61971602-62026169 (+)
FVB/NJ	ENSMUSG00205005250	lncRNA gene	Chr7:57635885-57690455 (+)
JF1/MsJ	ENSUMUG00000012367	lncRNA gene	Chr7:66705237-66759787 (+)
LP/J	ENSMUSG00230021575	lncRNA gene	Chr7:68060759-68115323 (+)
NOD/ShiLtJ	ENSMUSG00190007577	lncRNA gene	Chr7:57736925-57791505 (+)
NZO/HlLtJ	ENSMUSG00225017314	lncRNA gene	Chr7:66337790-66392352 (+)
PWK/PhJ	ENSLUMG00010018926	lncRNA gene	Chr7:56258975-56313532 (+)
SPRET/EiJ	ENSMSPG00010003481	lncRNA gene	Chr7:56602800-56657334 (+)
WSB/EiJ	ENSIUOG00005005685	lncRNA gene	Chr7:58156191-58210792 (+)

Homology

• Gene Tree
  4930402F11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930402F11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  1

• Ensembl
  ENSMUSG00000108885 (Evidence)
• NCBI Gene
  73796

Representative Sequences			Length	Strain/Species
genomic	73796	NCBI Gene Model | MGI Sequence Detail	3596	C57BL/6J
transcript	NR_045940	RefSeq | MGI Sequence Detail	1000	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 4930402F11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67158	Chr7:69145845-69145880 (+)	21 bp