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Platr9 Gene Detail
Summary
  • Symbol
    Platr9
  • Name
    pluripotency associated transcript 9
  • Synonyms
    2410114N07Rik
Location &
Maps
more
  • Sequence Map
    Chr4:34909789-34911481 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 16.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    141 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920946
 lncRNA gene Chr4:34906124-34911482 (-)
129S1/SvImJ ENSMUSG00200005585
 lncRNA gene Chr4:31645593-31650950 (-)
A/J ENSMUSG00195003741
 lncRNA gene Chr4:32094024-32108368 (-)
AKR/J ENSMUSG00220037519
 lncRNA gene Chr4:31887805-31902150 (-)
BALB/cJ ENSMUSG00180027445
 lncRNA gene Chr4:31623677-31629034 (-)
C3H/HeJ ENSMUSG00175023319
 lncRNA gene Chr4:32074948-32089292 (-)
C57BL/6NJ ENSMUSG00215033510
 lncRNA gene Chr4:31706758-31712115 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013668
 unclassified non-coding RNA gene Chr4:29430226-29433950 (-)
CAST/EiJ ENSTCUG00005004826
 lncRNA gene Chr4:31624231-31629588 (-)
CBA/J ENSMUSG00210007858
 lncRNA gene Chr4:31794767-31809111 (-)
DBA/2J ENSMUSG00185006734
 lncRNA gene Chr4:31867180-31881524 (-)
FVB/NJ ENSMUSG00205029233
 lncRNA gene Chr4:31458410-31472756 (-)
JF1/MsJ ENSUMUG00000029166
 lncRNA gene Chr4:31909525-31914359 (-)
LP/J ENSMUSG00230001253
 lncRNA gene Chr4:35175854-35181211 (-)
NOD/ShiLtJ ENSMUSG00190006486
 lncRNA gene Chr4:31790017-31804360 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010006840
 lncRNA gene Chr4:31366722-31371555 (-)
SPRET/EiJ ENSMSPG00010024532
 lncRNA gene Chr4:32251904-32256814 (-)
WSB/EiJ ENSIUOG00005050058
 lncRNA gene Chr4:31635726-31641083 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    3
  • Chemically and radiation induced
    1
  • Gene trapped
    2
  • Genomic Mutations
    1 involving Platr9
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73696 NCBI Gene Model | MGI Sequence Detail 1693 C57BL/6J ±  kb
transcript NR_040652 RefSeq | MGI Sequence Detail 951 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory