1700113B19Rik Gene Detail

Summary

• Symbol
  1700113B19Rik
• Name
  RIKEN cDNA 1700113B19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920890
  NCBI Gene: 73640
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:138189380-138189799 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920890	lncRNA gene	Chr1:138189380-138189799 (+)
129S1/SvImJ	ENSMUSG00200008320	unclassified gene	Chr1:135821662-135822081 (+)
A/J	ENSMUSG00195016565	unclassified gene	Chr1:134907873-134908293 (+)
AKR/J	ENSMUSG00220003409	unclassified gene	Chr1:134768994-134769413 (+)
BALB/cJ	ENSMUSG00180011724	unclassified gene	Chr1:135418704-135419123 (+)
C3H/HeJ	ENSMUSG00175006894	unclassified gene	Chr1:135125475-135125895 (+)
C57BL/6NJ	ENSMUSG00215021349	unclassified gene	Chr1:135120648-135121067 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000446	unclassified gene	Chr1:129819449-129819862 (+)
CAST/EiJ	ENSTCUG00005013596	unclassified gene	Chr1:134062352-134062776 (+)
CBA/J	ENSMUSG00210014288	unclassified gene	Chr1:135071436-135071856 (+)
DBA/2J	ENSMUSG00185033372	unclassified gene	Chr1:139433092-139433511 (+)
FVB/NJ	ENSMUSG00205002740	unclassified gene	Chr1:134432893-134433312 (+)
JF1/MsJ	ENSUMUG00000050404	unclassified gene	Chr1:138540562-138540983 (+)
LP/J	ENSMUSG00230040021	unclassified gene	Chr1:138952927-138953346 (+)
NOD/ShiLtJ	ENSMUSG00190002990	unclassified gene	Chr1:135073634-135074053 (+)
NZO/HlLtJ	ENSMUSG00225020704	unclassified gene	Chr1:142720145-142720564 (+)
PWK/PhJ	ENSLUMG00010001966	unclassified gene	Chr1:134164337-134164758 (+)
SPRET/EiJ	ENSMSPG00010012574	unclassified gene	Chr1:137010254-137010676 (+)
WSB/EiJ	ENSIUOG00005030170	unclassified gene	Chr1:134858853-134859273 (+)

Homology

• Gene Tree
  1700113B19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102822 (Evidence)
• NCBI Gene
  73640

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102822	Ensembl Gene Model | MGI Sequence Detail	420	C57BL/6J
transcript	AK007192	GenBank | ENA | DDBJ | MGI Sequence Detail	420	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573