1700122E12Rik Gene Detail

Summary

• Symbol
  1700122E12Rik
• Name
  RIKEN cDNA 1700122E12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920869
  NCBI Gene: 73619
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:85573751-85582073 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 41.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920869	lncRNA gene	Chr8:85573741-85583294 (+)
129S1/SvImJ	ENSMUSG00200025874	lncRNA gene	Chr8:79939160-79940377 (+)
A/J	ENSMUSG00195018454	lncRNA gene	Chr8:80297333-80298550 (+)
AKR/J	ENSMUSG00220024465	lncRNA gene	Chr8:80338738-80339955 (+)
BALB/cJ	ENSMUSG00180021787	lncRNA gene	Chr8:80137836-80139053 (+)
C3H/HeJ	ENSMUSG00175011062	lncRNA gene	Chr8:80233017-80234234 (+)
C57BL/6NJ	ENSMUSG00215026176	lncRNA gene	Chr8:79870108-79871335 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013841	unclassified non-coding RNA gene	Chr8:76182553-76183766 (+)
CAST/EiJ	ENSTCUG00005036634	lncRNA gene	Chr8:79747428-79748657 (+)
CBA/J	ENSMUSG00210020386	lncRNA gene	Chr8:80220144-80221361 (+)
DBA/2J	ENSMUSG00185040123	lncRNA gene	Chr8:86328752-86329969 (+)
FVB/NJ	ENSMUSG00205039820	lncRNA gene	Chr8:79275963-79277180 (+)
JF1/MsJ	ENSUMUG00000038947	lncRNA gene	Chr8:88636612-88637840 (+)
LP/J	ENSMUSG00230030415	lncRNA gene	Chr8:89936160-89937377 (+)
NOD/ShiLtJ	ENSMUSG00190031528	lncRNA gene	Chr8:80296507-80297724 (+)
NZO/HlLtJ	ENSMUSG00225040828	lncRNA gene	Chr8:93330824-93332051 (+)
PWK/PhJ	ENSLUMG00010031219	lncRNA gene	Chr8:79974016-79975242 (+)
SPRET/EiJ	ENSMSPG00010031993	lncRNA gene	Chr8:81888641-81889874 (+)
WSB/EiJ	ENSIUOG00005016545	lncRNA gene	Chr8:81034082-81035299 (+)

Homology

• Gene Tree
  1700122E12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  35 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700122E12Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000087685 (Evidence)
• NCBI Gene
  73619

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087685	Ensembl Gene Model | MGI Sequence Detail	8323	C57BL/6J
transcript	ENSMUST00000335334	Ensembl | MGI Sequence Detail	819	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 43

  Phenotypes 35
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for 1700122E12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2629	Chr8:85572871-85572894 (+)	-868 bp
Tssr78450	Chr8:85573852-85573863 (+)	107 bp
Tssr78451	Chr8:85573866-85573879 (+)	122 bp