1700128E19Rik Gene Detail

Summary

• Symbol
  1700128E19Rik
• Name
  RIKEN cDNA 1700128E19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920868
  NCBI Gene: 73618
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:11763247-11770542 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 5.73 cM, cytoband A2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920868	lncRNA gene	Chr8:11763234-11777144 (+)
129S1/SvImJ	ENSMUSG00200013571	lncRNA gene	Chr8:8645228-8654599 (+)
129S1/SvImJ	ENSMUSG00200009844	protein coding gene	Chr8:8645076-8653838 (+)
A/J	ENSMUSG00195010760	lncRNA gene	Chr8:9004930-9014287 (+)
A/J	ENSMUSG00195009611	protein coding gene	Chr8:9004778-9013526 (+)
AKR/J	ENSMUSG00220010210	protein coding gene	Chr8:8734036-8742784 (+)
AKR/J	ENSMUSG00220011180	lncRNA gene	Chr8:8734188-8743545 (+)
BALB/cJ	ENSMUSG00180004484	protein coding gene	Chr8:8643864-8652616 (+)
BALB/cJ	ENSMUSG00180005107	lncRNA gene	Chr8:8644016-8653377 (+)
C3H/HeJ	ENSMUSG00175008552	lncRNA gene	Chr8:8803949-8813303 (+)
C3H/HeJ	ENSMUSG00175008011	protein coding gene	Chr8:8803797-8812542 (+)
C57BL/6NJ	ENSMUSG00215005429	protein coding gene	Chr8:8678131-8686876 (+)
C57BL/6NJ	ENSMUSG00215009322	lncRNA gene	Chr8:8678283-8687637 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021589	lncRNA gene	Chr8:8642357-8651596 (+)
CBA/J	ENSMUSG00210011207	lncRNA gene	Chr8:8637818-8647174 (+)
CBA/J	ENSMUSG00210010425	protein coding gene	Chr8:8637666-8646413 (+)
DBA/2J	ENSMUSG00185003418	protein coding gene	Chr8:8770432-8779180 (+)
DBA/2J	ENSMUSG00185004257	lncRNA gene	Chr8:8770584-8779941 (+)
FVB/NJ	ENSMUSG00205004535	protein coding gene	Chr8:8663046-8671789 (+)
FVB/NJ	ENSMUSG00205005869	lncRNA gene	Chr8:8663198-8672550 (+)
JF1/MsJ	ENSUMUG00000044385	lncRNA gene	Chr8:8793604-8802817 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011423	lncRNA gene	Chr8:8762736-8772093 (+)
NOD/ShiLtJ	ENSMUSG00190010250	protein coding gene	Chr8:8762584-8771332 (+)
NZO/HlLtJ	ENSMUSG00225017453	protein coding gene	Chr8:18805110-18813876 (+)
NZO/HlLtJ	ENSMUSG00225018653	lncRNA gene	Chr8:18805262-18814637 (+)
PWK/PhJ	ENSLUMG00010011453	lncRNA gene	Chr8:8715221-8724875 (+)
SPRET/EiJ	ENSMSPG00010018919	lncRNA gene	Chr8:8840708-8850037 (+)
WSB/EiJ	ENSIUOG00005005090	lncRNA gene	Chr8:8654371-8663735 (+)

Homology

• Gene Tree
  1700128E19Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000031510 (Evidence)
• NCBI Gene
  73618

Representative Sequences			Length	Strain/Species
genomic	73618	NCBI Gene Model | MGI Sequence Detail	7296	C57BL/6J
transcript	AK007309	GenBank | ENA | DDBJ | MGI Sequence Detail	2440	C57BL/6J
polypeptide	Q9D971	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700128E19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76232	Chr8:11763259-11763268 (+)	17 bp
Tssr76233	Chr8:11763274-11763287 (+)	34 bp