1700125H03Rik Gene Detail

Summary

• Symbol
  1700125H03Rik
• Name
  RIKEN cDNA 1700125H03 gene
• Synonyms
  4930510D22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1920859
  NCBI Gene: 73609
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:68821111-68828362 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 33.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  306 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920859	lncRNA gene	Chr8:68821051-68828362 (+)
129S1/SvImJ	ENSMUSG00200033644	lncRNA gene	Chr8:63669525-63676793 (+)
A/J	ENSMUSG00195018229	lncRNA gene	Chr8:64080012-64087290 (+)
AKR/J	ENSMUSG00220025813	lncRNA gene	Chr8:63908639-63915916 (+)
BALB/cJ	ENSMUSG00180029607	lncRNA gene	Chr8:63644156-63651432 (+)
C3H/HeJ	ENSMUSG00175022455	lncRNA gene	Chr8:63906404-63913678 (+)
C57BL/6NJ	ENSMUSG00215038202	lncRNA gene	Chr8:63647168-63654444 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004132	antisense lncRNA gene	Chr8:60639680-60646968 (+)
CAST/EiJ	ENSTCUG00005040802	lncRNA gene	Chr8:63423879-63431221 (+)
CBA/J	ENSMUSG00210035307	lncRNA gene	Chr8:63790228-63797506 (+)
DBA/2J	ENSMUSG00185023417	lncRNA gene	Chr8:69838458-69845734 (+)
FVB/NJ	ENSMUSG00205044303	lncRNA gene	Chr8:63204087-63211361 (+)
JF1/MsJ	ENSUMUG00000041001	lncRNA gene	Chr8:72087548-72094858 (+)
LP/J	ENSMUSG00230035675	lncRNA gene	Chr8:73461060-73468330 (+)
NOD/ShiLtJ	ENSMUSG00190032182	lncRNA gene	Chr8:63695535-63702813 (+)
NZO/HlLtJ	ENSMUSG00225049039	lncRNA gene	Chr8:76875970-76883246 (+)
PWK/PhJ	ENSLUMG00010035845	lncRNA gene	Chr8:63556781-63564149 (+)
SPRET/EiJ	ENSMSPG00010042078	lncRNA gene	Chr8:64904229-64911431 (+)
WSB/EiJ	ENSIUOG00005027554	lncRNA gene	Chr8:64478589-64485871 (+)

Homology

• Gene Tree
  1700125H03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700125H03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000085197 (Evidence)
• NCBI Gene
  73609

Representative Sequences			Length	Strain/Species
genomic	73609	NCBI Gene Model | MGI Sequence Detail	7252	C57BL/6J
transcript	NR_038181	RefSeq | MGI Sequence Detail	644	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

Other
Accession IDs

MGI:1922328

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1700125H03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77598	Chr8:68821113-68821121 (+)	6 bp