1700126A01Rik Gene Detail

Summary

• Symbol
  1700126A01Rik
• Name
  RIKEN cDNA 1700126A01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920852
  NCBI Gene: 115487091
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:57166474-57168559 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920852	lncRNA gene	Chr1:57166448-57193328 (+)
129S1/SvImJ	ENSMUSG00200018824	lncRNA gene	Chr1:54661170-54663230 (+)
A/J	ENSMUSG00195030461	lncRNA gene	Chr1:54202484-54204544 (+)
AKR/J	ENSMUSG00220042319	lncRNA gene	Chr1:54285356-54287416 (+)
BALB/cJ	ENSMUSG00180014243	lncRNA gene	Chr1:54442873-54444933 (+)
C3H/HeJ	ENSMUSG00175001256	lncRNA gene	Chr1:54580100-54582160 (+)
C57BL/6NJ	ENSMUSG00215032977	lncRNA gene	Chr1:54511827-54513887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004378	lincRNA gene	Chr1:50923784-50926198 (+)
CAST/EiJ	ENSTCUG00005014066	lncRNA gene	Chr1:54375546-54377606 (+)
CBA/J	ENSMUSG00210054084	lncRNA gene	Chr1:54260928-54262988 (+)
DBA/2J	ENSMUSG00185054959	lncRNA gene	Chr1:55380551-55382611 (+)
FVB/NJ	ENSMUSG00205024927	lncRNA gene	Chr1:54225841-54227901 (+)
JF1/MsJ	ENSUMUG00000046006	lncRNA gene	Chr1:54331804-54333864 (+)
LP/J	ENSMUSG00230029035	lncRNA gene	Chr1:55391171-55393231 (+)
NOD/ShiLtJ	ENSMUSG00190039444	lncRNA gene	Chr1:54421306-54423368 (+)
NZO/HlLtJ	ENSMUSG00225009544	lncRNA gene	Chr1:58587890-58589950 (+)
PWK/PhJ	ENSLUMG00010026673	lncRNA gene	Chr1:53862540-53864600 (+)
SPRET/EiJ	ENSMSPG00010025730	lncRNA gene	Chr1:55697044-55699106 (+)
WSB/EiJ	ENSIUOG00005021460	lncRNA gene	Chr1:54049582-54051643 (+)

Homology

• Gene Tree
  1700126A01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700126A01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000099945 (Evidence)
• NCBI Gene
  115487091

Representative Sequences			Length	Strain/Species
genomic	115487091	NCBI Gene Model | MGI Sequence Detail	2086	C57BL/6J
transcript	NR_166114	RefSeq | MGI Sequence Detail	2007	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700126A01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6741	Chr1:57166464-57166499 (+)	8 bp