1700112L15Rik Gene Detail

Summary

• Symbol
  1700112L15Rik
• Name
  RIKEN cDNA 1700112L15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920844
  NCBI Gene: 73594
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:96278421-96278930 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920844	lncRNA gene	Chr8:96278421-96278930 (+)
129S1/SvImJ	ENSMUSG00200015060	unclassified gene	Chr8:90640461-90640970 (+)
A/J	ENSMUSG00195004040	unclassified gene	Chr8:90975737-90976246 (+)
AKR/J	ENSMUSG00220011815	unclassified gene	Chr8:91012556-91013065 (+)
BALB/cJ	ENSMUSG00180004188	unclassified gene	Chr8:90877395-90877904 (+)
C3H/HeJ	ENSMUSG00175002803	unclassified gene	Chr8:90919099-90919608 (+)
C57BL/6NJ	ENSMUSG00215001240	unclassified gene	Chr8:90550426-90550935 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017387	unclassified gene	Chr8:90375935-90376444 (+)
CBA/J	ENSMUSG00210015359	unclassified gene	Chr8:90854537-90855046 (+)
DBA/2J	ENSMUSG00185024021	unclassified gene	Chr8:96963403-96963912 (+)
FVB/NJ	ENSMUSG00205019687	unclassified gene	Chr8:89964836-89965345 (+)
JF1/MsJ	ENSUMUG00000047297	unclassified gene	Chr8:99331736-99332245 (+)
LP/J	ENSMUSG00230008309	unclassified gene	Chr8:100625356-100625865 (+)
NOD/ShiLtJ	ENSMUSG00190012962	unclassified gene	Chr8:90981899-90982408 (+)
NZO/HlLtJ	ENSMUSG00225011503	unclassified gene	Chr8:104030423-104030932 (+)
PWK/PhJ	ENSLUMG00010044867	unclassified gene	Chr8:90706196-90706705 (+)
SPRET/EiJ	ENSMSPG00010006613	unclassified gene	Chr8:92723959-92724468 (+)
WSB/EiJ	ENSIUOG00005006432	unclassified gene	Chr8:91688522-91689031 (+)

Homology

• Gene Tree
  1700112L15Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110577 (Evidence)
• NCBI Gene
  73594

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110577	Ensembl Gene Model | MGI Sequence Detail	510	C57BL/6J
transcript	AK007183	GenBank | ENA | DDBJ | MGI Sequence Detail	511	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700112L15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78991	Chr8:96278417-96278420 (+)	-2 bp