1700092E19Rik Gene Detail

Summary

• Symbol
  1700092E19Rik
• Name
  RIKEN cDNA 1700092E19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920826
  NCBI Gene: 73576
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:26467142-26496389 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 11.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920826	lncRNA gene	Chr13:26467133-26496443 (-)
129S1/SvImJ	ENSMUSG00200032888	lncRNA gene	Chr13:23616425-23645676 (-)
A/J	ENSMUSG00195040259	lncRNA gene	Chr13:22764630-22793904 (-)
AKR/J	ENSMUSG00220012969	lncRNA gene	Chr13:22575160-22604423 (-)
BALB/cJ	ENSMUSG00180024253	lncRNA gene	Chr13:23069929-23099193 (-)
C3H/HeJ	ENSMUSG00175034595	lncRNA gene	Chr13:23092681-23121944 (-)
C57BL/6NJ	ENSMUSG00215012677	lncRNA gene	Chr13:23231793-23261063 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010778	lncRNA gene	Chr13:23255342-23284701 (-)
CBA/J	ENSMUSG00210027626	lncRNA gene	Chr13:23037311-23066574 (-)
DBA/2J	ENSMUSG00185021780	lncRNA gene	Chr13:23858895-23888162 (-)
FVB/NJ	ENSMUSG00205034173	lncRNA gene	Chr13:22866061-22895331 (-)
JF1/MsJ	ENSUMUG00000016066	lncRNA gene	Chr13:23516136-23545447 (-)
LP/J	ENSMUSG00230021529	lncRNA gene	Chr13:33180291-33209550 (-)
NOD/ShiLtJ	ENSMUSG00190035390	lncRNA gene	Chr13:22841020-22870273 (-)
NZO/HlLtJ	ENSMUSG00225046186	lncRNA gene	Chr13:26966526-26995779 (-)
PWK/PhJ	ENSLUMG00010030474	lncRNA gene	Chr13:22361752-22391051 (-)
SPRET/EiJ	ENSMSPG00010024844	lncRNA gene	Chr13:22264941-22295776 (-)
WSB/EiJ	ENSIUOG00005017262	lncRNA gene	Chr13:22407104-22436254 (-)

Homology

• Gene Tree
  1700092E19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700092E19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000084811 (Evidence)
• NCBI Gene
  73576

Representative Sequences			Length	Strain/Species
genomic	73576	NCBI Gene Model | MGI Sequence Detail	29248	C57BL/6J
transcript	NR_045933	RefSeq | MGI Sequence Detail	1641	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 1700092E19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121828	Chr13:26496368-26496386 (-)	12 bp