1700095J07Rik Gene Detail

Summary

• Symbol
  1700095J07Rik
• Name
  RIKEN cDNA 1700095J07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920824
  NCBI Gene: 115490402
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:30304614-30331804 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 12.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  714 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920824	lncRNA gene	Chr6:30304556-30331804 (+)
129S1/SvImJ	ENSMUSG00200036014	lncRNA gene	Chr6:27356085-27383226 (+)
A/J	ENSMUSG00195009256	lncRNA gene	Chr6:27318692-27345833 (+)
AKR/J	ENSMUSG00220003852	lncRNA gene	Chr6:26911754-26938902 (+)
BALB/cJ	ENSMUSG00180022314	lncRNA gene	Chr6:27450317-27477464 (+)
C3H/HeJ	ENSMUSG00175019524	lncRNA gene	Chr6:27313516-27340667 (+)
C57BL/6NJ	ENSMUSG00215028901	lncRNA gene	Chr6:27356850-27384022 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006299	lincRNA gene	Chr6:25169576-25172618 (+)
CAST/EiJ	ENSTCUG00005027960	lncRNA gene	Chr6:26901464-26935978 (+)
CBA/J	ENSMUSG00210004476	lncRNA gene	Chr6:27334711-27361850 (+)
DBA/2J	ENSMUSG00185022127	lncRNA gene	Chr6:27429270-27456408 (+)
FVB/NJ	ENSMUSG00205032365	lncRNA gene	Chr6:27403744-27430891 (+)
JF1/MsJ	ENSUMUG00000042014	lncRNA gene	Chr6:27127439-27154902 (+)
LP/J	ENSMUSG00230030412	lncRNA gene	Chr6:28372650-28399789 (+)
NOD/ShiLtJ	ENSMUSG00190030774	lncRNA gene	Chr6:27198290-27225433 (+)
NZO/HlLtJ	ENSMUSG00225014573	lncRNA gene	Chr6:30333644-30360781 (+)
PWK/PhJ	ENSLUMG00010026008	lncRNA gene	Chr6:26904399-26931735 (+)
SPRET/EiJ	ENSMSPG00010021828	lncRNA gene	Chr6:27335441-27362711 (+)
WSB/EiJ	ENSIUOG00005033970	lncRNA gene	Chr6:27508035-27535230 (+)

Homology

• Gene Tree
  1700095J07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000084861 (Evidence)
• NCBI Gene
  115490402

Representative Sequences			Length	Strain/Species
genomic	115490402	NCBI Gene Model | MGI Sequence Detail	27191	C57BL/6J
transcript	NR_166056	RefSeq | MGI Sequence Detail	1421	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700095J07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1802	Chr6:30304609-30304617 (+)	-1 bp