1700082M22Rik Gene Detail

Summary

• Symbol
  1700082M22Rik
• Name
  RIKEN cDNA 1700082M22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920784
  NCBI Gene: 105243269
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:105368184-105386199 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 53.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  459 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920784	lncRNA gene	Chr8:105368184-105388124 (+)
129S1/SvImJ	ENSMUSG00200015206	lncRNA gene	Chr8:99666684-99683437 (+)
A/J	ENSMUSG00195004136	lncRNA gene	Chr8:99950192-99966937 (+)
AKR/J	ENSMUSG00220011874	lncRNA gene	Chr8:100117301-100134056 (+)
BALB/cJ	ENSMUSG00180004234	lncRNA gene	Chr8:99975594-99992345 (+)
C3H/HeJ	ENSMUSG00175002996	lncRNA gene	Chr8:100032354-100049107 (+)
C57BL/6NJ	ENSMUSG00215001406	lncRNA gene	Chr8:99646677-99663430 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004142	antisense lncRNA gene	Chr8:95821725-95831771 (+)
CAST/EiJ	ENSTCUG00005023981	lncRNA gene	Chr8:99432395-99442702 (+)
CBA/J	ENSMUSG00210015404	lncRNA gene	Chr8:99960961-99977706 (+)
DBA/2J	ENSMUSG00185006032	lncRNA gene	Chr8:106068829-106085580 (+)
FVB/NJ	ENSMUSG00205019490	lncRNA gene	Chr8:98993807-98996498 (+)
JF1/MsJ	ENSUMUG00000015712	lncRNA gene	Chr8:108402055-108418806 (+)
LP/J	ENSMUSG00230008647	lncRNA gene	Chr8:109749364-109766116 (+)
NOD/ShiLtJ	ENSMUSG00190013855	lncRNA gene	Chr8:100099011-100115762 (+)
NZO/HlLtJ	ENSMUSG00225023142	lncRNA gene	Chr8:113099867-113116617 (+)
PWK/PhJ	ENSLUMG00010004195	lncRNA gene	Chr8:99916281-99926705 (+)
SPRET/EiJ	ENSMSPG00010041017	lncRNA gene	Chr8:102033652-102044100 (+)
WSB/EiJ	ENSIUOG00005006305	lncRNA gene	Chr8:100779043-100795806 (+)

Homology

• Gene Tree
  1700082M22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000023737 (Evidence)
• NCBI Gene
  105243269

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000023737	Ensembl Gene Model | MGI Sequence Detail	18016	C57BL/6J
transcript	ENSMUST00000305672	Ensembl | MGI Sequence Detail	2529	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9