1700080G18Rik Gene Detail

Summary

• Symbol
  1700080G18Rik
• Name
  RIKEN cDNA 1700080G18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920783
  NCBI Gene: 73533
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:30047392-30047978 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920783	lncRNA gene	Chr6:30047392-30047978 (-)
129S1/SvImJ	ENSMUSG00200035990	lncRNA gene	Chr6:27100138-27100681 (-)
A/J	ENSMUSG00195009338	lncRNA gene	Chr6:27062712-27063255 (-)
AKR/J	ENSMUSG00220004414	lncRNA gene	Chr6:26655797-26656340 (-)
BALB/cJ	ENSMUSG00180022610	lncRNA gene	Chr6:27194355-27194898 (-)
C3H/HeJ	ENSMUSG00175020613	lncRNA gene	Chr6:27057585-27058128 (-)
C57BL/6NJ	ENSMUSG00215025861	lncRNA gene	Chr6:27099641-27100184 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028795	lncRNA gene	Chr6:26646743-26647286 (-)
CBA/J	ENSMUSG00210004573	lncRNA gene	Chr6:27078813-27079356 (-)
DBA/2J	ENSMUSG00185022100	lncRNA gene	Chr6:27173340-27173883 (-)
FVB/NJ	ENSMUSG00205032181	lncRNA gene	Chr6:27147776-27148319 (-)
JF1/MsJ	ENSUMUG00000035331	lncRNA gene	Chr6:26871263-26871806 (-)
LP/J	ENSMUSG00230030749	lncRNA gene	Chr6:28116724-28117267 (-)
NOD/ShiLtJ	ENSMUSG00190032089	lncRNA gene	Chr6:26942370-26942913 (-)
NZO/HlLtJ	ENSMUSG00225014705	lncRNA gene	Chr6:30077710-30078253 (-)
PWK/PhJ	ENSLUMG00010024467	lncRNA gene	Chr6:26648660-26649203 (-)
SPRET/EiJ	ENSMSPG00010021746	lncRNA gene	Chr6:27076208-27076750 (-)
WSB/EiJ	ENSIUOG00005035682	lncRNA gene	Chr6:27250783-27251326 (-)

Homology

• Gene Tree
  1700080G18Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000120456 (Evidence)
• NCBI Gene
  73533

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120456	Ensembl Gene Model | MGI Sequence Detail	587	C57BL/6J
transcript	ENSMUST00000243420	Ensembl | MGI Sequence Detail	587	Not Applicable
polypeptide	Q9CVQ8	UniProt | EBI | MGI Sequence Detail	139	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700080G18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60103	Chr6:30047922-30047953 (-)	40 bp