1700072O05Rik MGI Mouse Gene Detail - MGI:1920755

Sequence Map

Chr6:120531757-120551165 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920755	lncRNA gene	Chr6:120531721-120587028 (+)
129S1/SvImJ	ENSMUSG00200051798	lncRNA gene	Chr6:117733385-117741448 (+)
A/J	ENSMUSG00195047802	lncRNA gene	Chr6:117147494-117155563 (+)
AKR/J	ENSMUSG00220032592	lncRNA gene	Chr6:116032699-116040767 (+)
BALB/cJ	ENSMUSG00180050818	lncRNA gene	Chr6:117515134-117523207 (+)
C3H/HeJ	ENSMUSG00175041376	lncRNA gene	Chr6:59947078-59955144 (-)
C57BL/6NJ	ENSMUSG00215048397	lncRNA gene	Chr6:117498428-117506514 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006422	lincRNA gene	Chr6:115608533-115617053 (+)
CAST/EiJ	ENSTCUG00005050796	lncRNA gene	Chr6:117311153-117319279 (+)
CBA/J	ENSMUSG00210046990	lncRNA gene	Chr6:117282169-117290236 (+)
DBA/2J	ENSMUSG00185049255	lncRNA gene	Chr6:117936729-117944813 (+)
FVB/NJ	ENSMUSG00205051309	lncRNA gene	Chr6:116381210-116389293 (+)
JF1/MsJ	ENSUMUG00000053263	lncRNA gene	Chr6:116527458-116535405 (+)
LP/J	ENSMUSG00230049237	lncRNA gene	Chr6:119130771-119138839 (+)
NOD/ShiLtJ	ENSMUSG00190051010	lncRNA gene	Chr6:116895086-116903153 (+)
NZO/HlLtJ	ENSMUSG00225047636	lncRNA gene	Chr6:121022262-121030345 (+)
PWK/PhJ	ENSLUMG00010049844	lncRNA gene	Chr6:115883028-115890769 (+)
SPRET/EiJ	ENSMSPG00010047231	lncRNA gene	Chr6:118753215-118761618 (+)
WSB/EiJ	ENSIUOG00005045565	lncRNA gene	Chr6:117547198-117555267 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	73505	NCBI Gene Model \| MGI Sequence Detail	19409	C57BL/6J	± kb
	transcript	NR_045733	RefSeq \| MGI Sequence Detail	668	ZRU/MplStud

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Summaries

All 11

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700072O05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58541	Chr6:120531745-120531754 (+)	-7 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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