1700081B01Rik Gene Detail

Summary

• Symbol
  1700081B01Rik
• Name
  RIKEN cDNA 1700081B01 gene
• Synonyms
  Gm43757

• Feature Type
  lncRNA gene
• IDs
  MGI:1920750
  NCBI Gene: 73500
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:126783666-126826830 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1500 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920750	lncRNA gene	Chr5:126771350-126826832 (+)
129S1/SvImJ	ENSMUSG00200031448	lncRNA gene	Chr5:120511896-120549253 (+)
A/J	ENSMUSG00195012854	lncRNA gene	Chr5:120046303-120083332 (+)
AKR/J	ENSMUSG00220047860	lncRNA gene	Chr5:119524985-119562144 (+)
BALB/cJ	ENSMUSG00180042422	lncRNA gene	Chr5:120153929-120190951 (+)
C3H/HeJ	ENSMUSG00175043048	lncRNA gene	Chr5:122130944-122168106 (+)
C57BL/6NJ	ENSMUSG00215044348	lncRNA gene	Chr5:120195866-120225245 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006202	lincRNA gene	Chr5:119633970-119664078 (+)
CAST/EiJ	ENSTCUG00005042584	lncRNA gene	Chr5:119421139-119450885 (+)
CBA/J	ENSMUSG00210010489	lncRNA gene	Chr5:120881765-120918922 (+)
DBA/2J	ENSMUSG00185008230	lncRNA gene	Chr5:123944530-123981882 (+)
FVB/NJ	ENSMUSG00205046996	lncRNA gene	Chr5:119812983-119850146 (+)
JF1/MsJ	ENSUMUG00000052897	lncRNA gene	Chr5:126844338-126873851 (+)
LP/J	ENSMUSG00230048239	lncRNA gene	Chr5:128038976-128075998 (+)
NOD/ShiLtJ	ENSMUSG00190046631	lncRNA gene	Chr5:119842260-119871759 (+)
NZO/HlLtJ	ENSMUSG00225014605	lncRNA gene	Chr5:135737767-135775126 (+)
PWK/PhJ	ENSLUMG00010046498	lncRNA gene	Chr5:118709770-118739302 (+)
SPRET/EiJ	ENSMSPG00010032220	lncRNA gene	Chr5:122037135-122066351 (+)
WSB/EiJ	ENSIUOG00005020339	lncRNA gene	Chr5:122519882-122549395 (+)

Homology

• Gene Tree
  1700081B01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700081B01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  2

• Ensembl
  ENSMUSG00000105673 (Evidence)
• NCBI Gene
  73500

Representative Sequences			Length	Strain/Species
genomic	73500	NCBI Gene Model | MGI Sequence Detail	43165	C57BL/6J
transcript	AK006961	GenBank | ENA | DDBJ | MGI Sequence Detail	311	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663894

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573