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1700080N15Rik Gene Detail
Summary
  • Symbol
    1700080N15Rik
  • Name
    RIKEN cDNA 1700080N15 gene
  • Synonyms
    4933408D14Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920739
    NCBI Gene: 73489
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:4136876-4145952 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 2.39 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920739
 lncRNA gene Chr2:4136874-4145952 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003494
 antisense lncRNA gene Chr2:1155301-1164515 (-)
A/J MGP_AJ_G0003474
 antisense lncRNA gene Chr2:1106297-1115276 (-)
AKR/J MGP_AKRJ_G0003453
 antisense lncRNA gene Chr2:1121848-1130776 (-)
BALB/cJ MGP_BALBcJ_G0003463
 antisense lncRNA gene Chr2:1078711-1088028 (-)
C3H/HeJ MGP_C3HHeJ_G0003411
 antisense lncRNA gene Chr2:1117764-1126714 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003601
 antisense lncRNA gene Chr2:1152088-1162204 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003111
 antisense lncRNA gene Chr2:978555-989592 (-)
CAST/EiJ MGP_CASTEiJ_G0003374
 antisense lncRNA gene Chr2:1111555-1122112 (-)
CBA/J MGP_CBAJ_G0003408
 antisense lncRNA gene Chr2:1212478-1222215 (-)
DBA/2J MGP_DBA2J_G0003416
 antisense lncRNA gene Chr2:1074630-1083626 (-)
FVB/NJ MGP_FVBNJ_G0003435
 antisense lncRNA gene Chr2:1077834-1087108 (-)
LP/J MGP_LPJ_G0003489
 antisense lncRNA gene Chr2:1143178-1157121 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003423
 antisense lncRNA gene Chr2:1155311-1164388 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003604
 antisense lncRNA gene Chr2:1116449-1125379 (-)
PWK/PhJ MGP_PWKPhJ_G0003330
 antisense lncRNA gene Chr2:1049096-1060868 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003275
 antisense lncRNA gene Chr2:1115482-1124444 (-)
WSB/EiJ MGP_WSBEiJ_G0003409
 antisense lncRNA gene Chr2:1126205-1136958 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73489 NCBI Gene Model | MGI Sequence Detail 9077 C57BL/6J ±  kb
transcript NR_040500 RefSeq | MGI Sequence Detail 434 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
Other
Accession IDs
less
MGI:1918318
References
more
  • Summaries
    All 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory