1700084J12Rik Pseudogene Detail

Summary

• Symbol
  1700084J12Rik
• Name
  RIKEN cDNA 1700084J12 gene

• Feature Type
  pseudogene
• IDs
  MGI:1920736
  NCBI Gene: 73486
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:33405355-33406085 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 13.74 cM, cytoband B3.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920736	pseudogene	Chr15:33405352-33406085 (-)
129S1/SvImJ	ENSMUSG00200028353	pseudogene	Chr15:30446346-30448334 (-)
A/J	ENSMUSG00195014601	pseudogene	Chr15:30328409-30330400 (-)
AKR/J	ENSMUSG00220047335	pseudogene	Chr15:30224283-30226274 (-)
BALB/cJ	ENSMUSG00180005625	pseudogene	Chr15:30285099-30287090 (-)
C3H/HeJ	ENSMUSG00175004713	pseudogene	Chr15:30472485-30474470 (-)
C57BL/6NJ	ENSMUSG00215005147	pseudogene	Chr15:30316138-30318129 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036838	pseudogene	Chr15:28410164-28412108 (-)
CAST/EiJ	ENSTCUG00005015180	pseudogene	Chr15:30350692-30352689 (-)
CBA/J	ENSMUSG00210024787	pseudogene	Chr15:30423139-30425124 (-)
DBA/2J	ENSMUSG00185023675	pseudogene	Chr15:30407851-30409836 (-)
FVB/NJ	ENSMUSG00205014406	pseudogene	Chr15:30290877-30292869 (-)
JF1/MsJ	ENSUMUG00000013841	pseudogene	Chr15:30365191-30367178 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190012739	pseudogene	Chr15:30391695-30393686 (-)
NZO/HlLtJ	ENSMUSG00225032300	pseudogene	Chr15:34098467-34100458 (-)
PWK/PhJ	ENSLUMG00010021950	pseudogene	Chr15:30515922-30517907 (-)
SPRET/EiJ	ENSMSPG00010024054	pseudogene	Chr15:31083307-31085297 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  1700084J12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 1700084J12Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000058101 (Evidence)
• NCBI Gene
  73486

Representative Sequences			Length	Strain/Species
genomic	73486	NCBI Gene Model | MGI Sequence Detail	731	C57BL/6J
transcript	NR_033608	RefSeq | MGI Sequence Detail	731	Not Specified
polypeptide	Q9D9F1	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039699 Large ribosomal subunit protein uL30
  IPR036919 Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
  IPR016082 Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573