1700081H04Rik Gene Detail

Summary

• Symbol
  1700081H04Rik
• Name
  RIKEN cDNA 1700081H04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920727
  NCBI Gene: 73477
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:119246301-119252608 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920727	lncRNA gene	Chr5:119245675-119255317 (+)
129S1/SvImJ	ENSMUSG00200029249	lncRNA gene	Chr5:112993316-112999608 (+)
A/J	ENSMUSG00195012453	lncRNA gene	Chr5:112514175-112520472 (+)
AKR/J	ENSMUSG00220046129	lncRNA gene	Chr5:112007637-112013914 (+)
BALB/cJ	ENSMUSG00180041924	lncRNA gene	Chr5:112628792-112635097 (+)
C3H/HeJ	ENSMUSG00175032068	lncRNA gene	Chr5:114623895-114630153 (+)
C57BL/6NJ	ENSMUSG00215043446	lncRNA gene	Chr5:112651374-112657682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006176	lincRNA gene	Chr5:112068399-112074843 (+)
CAST/EiJ	ENSTCUG00005041989	lncRNA gene	Chr5:111828104-111834333 (+)
CBA/J	ENSMUSG00210010270	lncRNA gene	Chr5:113374885-113381147 (+)
DBA/2J	ENSMUSG00185054286	lncRNA gene	Chr5:116439202-116445500 (+)
FVB/NJ	ENSMUSG00205052925	lncRNA gene	Chr5:112291792-112298052 (+)
JF1/MsJ	ENSUMUG00000054115	lncRNA gene	Chr5:119273789-119280073 (+)
LP/J	ENSMUSG00230049483	lncRNA gene	Chr5:120515665-120521957 (+)
NOD/ShiLtJ	ENSMUSG00190044320	lncRNA gene	Chr5:112324585-112330844 (+)
NZO/HlLtJ	ENSMUSG00225016756	lncRNA gene	Chr5:128194462-128200716 (+)
PWK/PhJ	ENSLUMG00010045096	lncRNA gene	Chr5:111172886-111179203 (+)
SPRET/EiJ	ENSMSPG00010046795	lncRNA gene	Chr5:114486764-114493139 (+)
WSB/EiJ	ENSIUOG00005019942	lncRNA gene	Chr5:115015434-115021695 (+)

Homology

• Gene Tree
  1700081H04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700081H04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1

• Ensembl
  ENSMUSG00000100573 (Evidence)
• NCBI Gene
  73477

Representative Sequences			Length	Strain/Species
genomic	73477	NCBI Gene Model | MGI Sequence Detail	6308	C57BL/6J
transcript	NR_040693	RefSeq | MGI Sequence Detail	1126	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573