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Snhg9 Gene Detail
Summary
  • Symbol
    Snhg9
  • Name
    small nucleolar RNA host gene 9
  • Synonyms
    1700072N11Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920724
    NCBI Gene: 73474
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:24938505-24938939 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 12.51 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    136 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920724
 lncRNA gene Chr17:24938495-24939471 (-)
129S1/SvImJ ENSMUSG00200054335
 lncRNA gene Chr17:20385530-20385994 (-)
A/J ENSMUSG00195054417
 lncRNA gene Chr17:21404398-21404862 (-)
AKR/J ENSMUSG00220053982
 lncRNA gene Chr17:20450238-20450702 (-)
BALB/cJ ENSMUSG00180051355
 lncRNA gene Chr17:20683727-20684191 (-)
C3H/HeJ ENSMUSG00175054122
 lncRNA gene Chr17:20442086-20442550 (-)
C57BL/6NJ ENSMUSG00215054200
 lncRNA gene Chr17:20446609-20447074 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003000
 antisense lncRNA gene Chr17:20553757-20554190 (-)
CAST/EiJ ENSTCUG00005051330
 lncRNA gene Chr17:21017135-21017599 (-)
CBA/J ENSMUSG00210050884
 lncRNA gene Chr17:20280915-20281379 (-)
DBA/2J ENSMUSG00185053309
 lncRNA gene Chr17:22492700-22493164 (-)
FVB/NJ ENSMUSG00205052985
 lncRNA gene Chr17:20743776-20744240 (-)
JF1/MsJ ENSUMUG00000057532
 lncRNA gene Chr17:21938477-21938942 (-)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190054099
 lncRNA gene Chr17:20381459-20381923 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010020442
 lncRNA gene Chr17:19847474-19847939 (-)
SPRET/EiJ ENSMSPG00010049740
 lncRNA gene Chr17:21183243-21183705 (-)
WSB/EiJ ENSIUOG00005052022
 lncRNA gene Chr17:21129758-21130222 (-)



Homology
more
  • Human Ortholog
    SNHG9, small nucleolar RNA host gene 9
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG9, small nucleolar RNA host gene 9
  • Synonyms
    NCRNA00062
  • Links
    NCBI Gene ID: 735301

  • Chr Location
    16p13.3; chr16:1964526-1965513 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73474 NCBI Gene Model | MGI Sequence Detail 435 C57BL/6J ±  kb
transcript NR_027900 RefSeq | MGI Sequence Detail 183 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:340252 Wang Y, et al., The gut microbiota reprograms intestinal lipid metabolism through long noncoding RNA Snhg9. Science. 2023 Aug 25;381(6660):851-857
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory