1700052H01Rik Gene Detail

Summary

• Symbol
  1700052H01Rik
• Name
  RIKEN cDNA 1700052H01 gene
• Synonyms
  Gm30852

• Feature Type
  lncRNA gene
• IDs
  MGI:1920712
  NCBI Gene: 73462
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:41310305-41324074 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  492 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920712	lncRNA gene	Chr3:41308499-41362716 (+)
129S1/SvImJ	ENSMUSG00200006641	lncRNA gene	Chr3:38045179-38084730 (+)
A/J	ENSMUSG00195001497	lncRNA gene	Chr3:38029554-38069106 (+)
AKR/J	ENSMUSG00220000712	lncRNA gene	Chr3:38118767-38158210 (+)
BALB/cJ	ENSMUSG00180002695	lncRNA gene	Chr3:38156679-38196235 (+)
C3H/HeJ	ENSMUSG00175003461	lncRNA gene	Chr3:38027446-38066992 (+)
C57BL/6NJ	ENSMUSG00215001514	lncRNA gene	Chr3:38446451-38485893 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005614	lincRNA gene	Chr3:35902440-35941477 (+)
CAST/EiJ	ENSTCUG00005001322	lncRNA gene	Chr3:37902823-37942204 (+)
CBA/J	ENSMUSG00210001942	lncRNA gene	Chr3:38122877-38162424 (+)
DBA/2J	ENSMUSG00185001522	lncRNA gene	Chr3:38319436-38358983 (+)
FVB/NJ	ENSMUSG00205000866	lncRNA gene	Chr3:37445606-37485048 (+)
JF1/MsJ	ENSUMUG00000001317	lncRNA gene	Chr3:37826607-37866348 (+)
LP/J	ENSMUSG00230024047	lncRNA gene	Chr3:40286152-40325701 (+)
NOD/ShiLtJ	ENSMUSG00190001746	lncRNA gene	Chr3:38382662-38422104 (+)
NZO/HlLtJ	ENSMUSG00225000944	lncRNA gene	Chr3:42907119-42946669 (+)
PWK/PhJ	ENSLUMG00010000894	lncRNA gene	Chr3:37873283-37912997 (+)
SPRET/EiJ	ENSMSPG00010000718	lncRNA gene	Chr3:38308811-38348397 (+)
WSB/EiJ	ENSIUOG00005014534	lncRNA gene	Chr3:38308273-38347720 (+)

Homology

• Gene Tree
  1700052H01Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 1700052H01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2

• Ensembl
  ENSMUSG00000105297 (Evidence)
• NCBI Gene
  73462

Representative Sequences			Length	Strain/Species
genomic	73462	NCBI Gene Model | MGI Sequence Detail	13770	C57BL/6J
transcript	AK006766	GenBank | ENA | DDBJ | MGI Sequence Detail	430	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5590011

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 1700052H01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28991	Chr3:41308576-41308598 (+)	-1,718 bp