1700062C10Rik Gene Detail

Summary

• Symbol
  1700062C10Rik
• Name
  RIKEN cDNA 1700062C10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920690
  NCBI Gene: 73440
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:6432714-6468959 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1245 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920690	lncRNA gene	Chr14:6432492-6469995 (+)
129S1/SvImJ	ENSMUSG00200026051	lncRNA gene	Chr14:3022096-3053339 (+)
A/J	ENSMUSG00195031967	lncRNA gene	Chr14:3898585-3928203 (+)
AKR/J	ENSMUSG00220023516	lncRNA gene	Chr14:3048961-3078577 (+)
BALB/cJ	ENSMUSG00180024770	lncRNA gene	Chr14:3208673-3238264 (+)
C3H/HeJ	ENSMUSG00175009540	lncRNA gene	Chr14:3179666-3210910 (+)
C57BL/6NJ	ENSMUSG00215021364	lncRNA gene	Chr14:3471312-3508817 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031014	lncRNA gene	Chr14:3166534-3195622 (+)
CBA/J	ENSMUSG00210037915	lncRNA gene	Chr14:3401162-3432409 (+)
DBA/2J	ENSMUSG00185037539	lncRNA gene	Chr14:3406887-3438125 (+)
FVB/NJ	ENSMUSG00205025896	lncRNA gene	Chr14:3444845-3482348 (+)
JF1/MsJ	ENSUMUG00000027454	lncRNA gene	Chr14:3404761-3436023 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032446	lncRNA gene	Chr14:3470644-3500267 (+)
NZO/HlLtJ	ENSMUSG00225037464	lncRNA gene	Chr14:3882703-3912303 (+)
PWK/PhJ	ENSLUMG00010034292	lncRNA gene	Chr14:24721502-24753266 (+)
SPRET/EiJ	ENSMSPG00010002714	lncRNA gene	Chr14:3578372-3611882 (+)
WSB/EiJ	ENSIUOG00005025064	lncRNA gene	Chr14:3267197-3304698 (+)

Homology

• Gene Tree
  1700062C10Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000114390 (Evidence)
• NCBI Gene
  73440

Representative Sequences			Length	Strain/Species
genomic	73440	NCBI Gene Model | MGI Sequence Detail	36246	C57BL/6J
transcript	AK006860	GenBank | ENA | DDBJ | MGI Sequence Detail	397	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573