1700066B17Rik Gene Detail

Summary

• Symbol
  1700066B17Rik
• Name
  RIKEN cDNA 1700066B17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920676
  NCBI Gene: 73426
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:39881588-39886490 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  313 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920676	lncRNA gene	Chr1:39870066-39932037 (-)
129S1/SvImJ	ENSMUSG00200004389	lncRNA gene	Chr1:37473647-37481781 (-)
A/J	ENSMUSG00195043313	lncRNA gene	Chr1:37146974-37155113 (-)
AKR/J	ENSMUSG00220010040	lncRNA gene	Chr1:37137698-37145851 (-)
BALB/cJ	ENSMUSG00180011938	lncRNA gene	Chr1:37217228-37225385 (-)
C3H/HeJ	ENSMUSG00175001383	lncRNA gene	Chr1:37150018-37158157 (-)
C57BL/6NJ	ENSMUSG00215031560	lncRNA gene	Chr1:37192325-37200486 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004353	lincRNA gene	Chr1:34469987-34478301 (-)
CAST/EiJ	ENSTCUG00005003124	lncRNA gene	Chr1:37265149-37273340 (-)
CBA/J	ENSMUSG00210006405	lncRNA gene	Chr1:36954283-36962436 (-)
DBA/2J	ENSMUSG00185011070	lncRNA gene	Chr1:38056253-38064408 (-)
FVB/NJ	ENSMUSG00205036229	lncRNA gene	Chr1:37162109-37170273 (-)
JF1/MsJ	ENSUMUG00000029380	lncRNA gene	Chr1:37272199-37280405 (-)
LP/J	ENSMUSG00230027250	lncRNA gene	Chr1:38091891-38100036 (-)
NOD/ShiLtJ	ENSMUSG00190043528	lncRNA gene	Chr1:37171042-37179205 (-)
NZO/HlLtJ	ENSMUSG00225000836	lncRNA gene	Chr1:41351285-41359422 (-)
PWK/PhJ	ENSLUMG00010039135	lncRNA gene	Chr1:36798610-36806805 (-)
SPRET/EiJ	ENSMSPG00010031608	lncRNA gene	Chr1:38265245-38273264 (-)
WSB/EiJ	ENSIUOG00005040982	lncRNA gene	Chr1:37093647-37101835 (-)

Homology

• Gene Tree
  1700066B17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 1700066B17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  111
• RefSeq
  1

• Ensembl
  ENSMUSG00000101634 (Evidence)
• NCBI Gene
  73426

Representative Sequences			Length	Strain/Species
genomic	73426	NCBI Gene Model | MGI Sequence Detail	4903	C57BL/6J
transcript	NR_040465	RefSeq | MGI Sequence Detail	531	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 1700066B17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11413	Chr1:39886482-39886494 (-)	2 bp