1700065D16Rik MGI Mouse Gene Detail - MGI:1920660

Symbol

1700065D16Rik
Name

RIKEN cDNA 1700065D16 gene

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:1920660
NCBI Gene: 73410
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr9:95737471-95739935 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 50.27 cM
Mapping Data

2 experiments

SNPs within 2kb

161 from dbSNP Build 142
Strain Annotations

30

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920660	protein coding gene	Chr9:95737466-95740375 (-)
129S1/SvImJ	ENSMUSG00200017093	lncRNA gene	Chr9:92859910-92862814 (-)
129S1/SvImJ	ENSMUSG00200015537	protein coding gene	Chr9:92851840-92862902 (-)
A/J	ENSMUSG00195018859	lncRNA gene	Chr9:92127302-92130206 (-)
A/J	ENSMUSG00195015599	protein coding gene	Chr9:92119228-92130294 (-)
AKR/J	ENSMUSG00220039568	lncRNA gene	Chr9:92474155-92477059 (-)
AKR/J	ENSMUSG00220036239	protein coding gene	Chr9:92466075-92477147 (-)
BALB/cJ	ENSMUSG00180018968	protein coding gene	Chr9:92438821-92449885 (-)
BALB/cJ	ENSMUSG00180028060	lncRNA gene	Chr9:92446893-92449797 (-)
C3H/HeJ	ENSMUSG00175012875	lncRNA gene	Chr9:92786927-92789831 (-)
C3H/HeJ	ENSMUSG00175011059	protein coding gene	Chr9:92778855-92789862 (-)
C57BL/6NJ	ENSMUSG00215014138	protein coding gene	Chr9:92745256-92756319 (-)
C57BL/6NJ	ENSMUSG00215023187	lncRNA gene	Chr9:92753327-92756231 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004223	antisense lncRNA gene	Chr9:91459978-91462907 (-)
CAST/EiJ	ENSTCUG00005014088	lncRNA gene	Chr9:92609598-92612529 (-)
CBA/J	ENSMUSG00210015179	protein coding gene	Chr9:92620853-92631917 (-)
CBA/J	ENSMUSG00210015419	lncRNA gene	Chr9:92628925-92631829 (-)
DBA/2J	ENSMUSG00185011567	protein coding gene	Chr9:92806964-92818028 (-)
DBA/2J	ENSMUSG00185011993	lncRNA gene	Chr9:92815036-92817940 (-)
FVB/NJ	ENSMUSG00205024545	lncRNA gene	Chr9:92819823-92822727 (-)
FVB/NJ	ENSMUSG00205014632	protein coding gene	Chr9:92811751-92822815 (-)
JF1/MsJ	ENSUMUG00000047462	lncRNA gene	Chr9:92517855-92520797 (-)
LP/J	ENSMUSG00230021559	lncRNA gene	Chr9:92983401-92986305 (-)
LP/J	ENSMUSG00230018806	protein coding gene	Chr9:92979999-92986393 (-)
NOD/ShiLtJ	ENSMUSG00190025771	protein coding gene	Chr9:92431862-92442927 (-)
NOD/ShiLtJ	ENSMUSG00190038630	lncRNA gene	Chr9:92439935-92442839 (-)
NZO/HlLtJ	ENSMUSG00225021470	lncRNA gene	Chr9:93093703-93096645 (-)
PWK/PhJ	ENSLUMG00010027177	lncRNA gene	Chr9:92511582-92514523 (-)
SPRET/EiJ	ENSMSPG00010004051	lncRNA gene	Chr9:94325834-94328744 (-)
WSB/EiJ	ENSIUOG00005024519	lncRNA gene	Chr9:91888316-91891220 (-)

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Gene Tree

1700065D16Rik

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

1
Chemically induced (other)

1
Genomic Mutations

1 involving 1700065D16Rik
Incidental Mutations

Mutagenetix
Find Mice (IMSR)

1 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

10

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

59
RefSeq

3
UniProt

4

Ensembl

ENSMUSG00000096655 (Evidence)
NCBI Gene

73410

			Length	Strain/Species	Flank
genomic	73410	NCBI Gene Model \| MGI Sequence Detail	2465	C57BL/6J	± kb
transcript	NM_001271569	RefSeq \| MGI Sequence Detail	519	C57BL/6
polypeptide	NP_001258498	RefSeq \| MGI Sequence Detail	120	C57BL/6

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UniProt

4 Sequences

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All nucleic 11

Genomic 1

cDNA 10

Microarray probesets 2

Summaries

All 15

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700065D16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90942	Chr9:95739934-95739948 (-)	-6 bp
Tssr90941	Chr9:95739917-95739929 (-)	12 bp
Tssr90940	Chr9:95739612-95739623 (-)	317 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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