1700055D18Rik Gene Detail

Summary

• Symbol
  1700055D18Rik
• Name
  RIKEN cDNA 1700055D18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920655
  NCBI Gene: 73405
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:45012810-45014351 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920655	lncRNA gene	Chr4:45011687-45017739 (+)
129S1/SvImJ	ENSMUSG00200003520	lncRNA gene	Chr4:41059975-41063694 (+)
A/J	ENSMUSG00195006676	lncRNA gene	Chr4:41524104-41527823 (+)
AKR/J	ENSMUSG00220002938	lncRNA gene	Chr4:41210144-41213863 (+)
BALB/cJ	ENSMUSG00180030812	lncRNA gene	Chr4:41110787-41114506 (+)
C3H/HeJ	ENSMUSG00175021662	lncRNA gene	Chr4:41255026-41258745 (+)
C57BL/6NJ	ENSMUSG00215027323	lncRNA gene	Chr4:41033412-41037131 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038233	lncRNA gene	Chr4:41296124-41299852 (+)
CBA/J	ENSMUSG00210019585	lncRNA gene	Chr4:40946842-40950561 (+)
DBA/2J	ENSMUSG00185033510	lncRNA gene	Chr4:41310262-41313981 (+)
FVB/NJ	ENSMUSG00205021992	lncRNA gene	Chr4:40579123-40582842 (+)
JF1/MsJ	ENSUMUG00000038506	lncRNA gene	Chr4:41538897-41542611 (+)
LP/J	ENSMUSG00230042867	lncRNA gene	Chr4:44861076-44864795 (+)
NOD/ShiLtJ	ENSMUSG00190026657	lncRNA gene	Chr4:41168369-41172088 (+)
NZO/HlLtJ	ENSMUSG00225007031	lncRNA gene	Chr4:49455393-49459112 (+)
PWK/PhJ	ENSLUMG00010012701	lncRNA gene	Chr4:40541135-40544849 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005004529	lncRNA gene	Chr4:40918439-40922153 (+)

Homology

• Gene Tree
  1700055D18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000070997 (Evidence)
• NCBI Gene
  73405

Representative Sequences			Length	Strain/Species
genomic	73405	NCBI Gene Model | MGI Sequence Detail	1542	C57BL/6J
transcript	NR_166789	RefSeq | MGI Sequence Detail	1542	C57BL/6
polypeptide	Q8C9D1	UniProt | EBI | MGI Sequence Detail	175	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700055D18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37046	Chr4:45011728-45011748 (+)	-1,072 bp
Tssr37047	Chr4:45011758-45011771 (+)	-1,045 bp
Tssr37048	Chr4:45012168-45012204 (+)	-624 bp
Tssr37049	Chr4:45012795-45012844 (+)	10 bp
Tssr37050	Chr4:45013531-45013536 (+)	724 bp